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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gpj FAD Siderophore-interacting protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2gpj FADSiderophore-interacting protein / 1.480
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.784
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.776
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.772
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.770
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.768
1gaw FADFerredoxin / 0.766
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.764
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.764
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.762
1gaq FADFerredoxin / 0.760
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.757
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.757
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.757
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.752
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.751
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.751
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.749
1que FADFerredoxin--NADP reductase 1.18.1.2 0.748
2rc6 FADFerredoxin--NADP reductase / 0.748
2vnj FADNADPH:ferredoxin reductase / 0.746
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.746
1amo FADNADPH--cytochrome P450 reductase / 0.745
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.745
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.745
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.745
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.744
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.744
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.743
3in6 FMNUncharacterized protein / 0.743
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.742
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.740
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.740
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.737
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.737
2hq9 FADMll6688 protein / 0.736
4f07 FADStyrene monooxygenase component 2 / 0.735
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.733
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.732
2bgi FADNADPH:ferredoxin reductase / 0.732
4b4d FADFerredoxin-NADP reductase / 0.731
3qe2 FADNADPH--cytochrome P450 reductase / 0.729
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.729
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.729
2bf4 FADNADPH--cytochrome P450 reductase / 0.728
3w5u FADFerredoxin / 0.728
2rc5 FADFerredoxin--NADP reductase / 0.726
1sm4 FADFerredoxin--NADP reductase / 0.725
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.725
3qft FADNADPH--cytochrome P450 reductase / 0.725
3qfc FADNADPH--cytochrome P450 reductase / 0.724
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.724
4rhe FMNFlavin prenyltransferase UbiX / 0.724
2iml FMNUncharacterized protein / 0.723
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.722
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.721
2bn4 FADNADPH--cytochrome P450 reductase / 0.721
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.720
3qfs FADNADPH--cytochrome P450 reductase / 0.720
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.718
4y9u FADNADPH--cytochrome P450 reductase / 0.718
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.717
3crz FADFerredoxin--NADP+ reductase / 0.717
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.717
1cqx FADFlavohemoprotein / 0.716
1gvh FADFlavohemoprotein / 0.715
2bgj FADNADPH:ferredoxin reductase / 0.715
2vnk FADNADPH:ferredoxin reductase / 0.715
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.714
3a3b RBFLumazine protein / 0.714
3vo2 FADFerredoxin--NADP reductase / 0.713
2vnh FADNADPH:ferredoxin reductase / 0.712
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.711
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.711
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.710
3ojw FADNADPH--cytochrome P450 reductase / 0.709
3qfr FADNADPH--cytochrome P450 reductase / 0.709
1tll FADNitric oxide synthase, brain 1.14.13.39 0.708
4y9r FADNADPH--cytochrome P450 reductase / 0.708
1j9z FADNADPH--cytochrome P450 reductase / 0.707
1ja0 FADNADPH--cytochrome P450 reductase / 0.707
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.704
2eix FADNADH-cytochrome b5 reductase / 0.701
2nr4 FMNConserved protein / 0.701
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.699
4y7c FADNADPH--cytochrome P450 reductase / 0.698
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.697
1ja1 FADNADPH--cytochrome P450 reductase / 0.692
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.689
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.688
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.687
3ojx FADNADPH--cytochrome P450 reductase / 0.686
4eer FMNPhototropin-2 2.7.11.1 0.685
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.683
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.680
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.679
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.679
1eje FMNProtein MTH_152 / 0.678
3pl8 FADPyranose 2-oxidase / 0.677
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.676
4qvb F42F420H(2)-dependent reductase Rv1155 1.4.3.5 0.676
1usc FMNMonooxygenase / 0.675
3a6r FMNFMN-binding protein / 0.673
3vy2 FMNFMN-binding protein / 0.672
4gut FADLysine-specific histone demethylase 1B 1 0.672
4yaf FADNADPH--cytochrome P450 reductase / 0.671
2igo FADPyranose 2-oxidase / 0.670
4yau FADNADPH--cytochrome P450 reductase / 0.668
2b9y FADPutative aminooxidase / 0.667
4gus FADLysine-specific histone demethylase 1B 1 0.667
4hhd FMNPhototropin-1 2.7.11.1 0.667
2bpo FADNADPH--cytochrome P450 reductase / 0.666
5iot UMPFlavin-dependent thymidylate synthase 2.1.1.148 0.666
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.665
2pr5 FMNBlue-light photoreceptor / 0.665
4ybn FADFlavin-nucleotide-binding protein / 0.663
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.662
4fwj FADLysine-specific histone demethylase 1B 1 0.662
3fg2 FADPutative rubredoxin reductase / 0.661
3ojx FMNNADPH--cytochrome P450 reductase / 0.661
3a6q FMNFMN-binding protein / 0.660
1pkv RBFRiboflavin synthase 2.5.1.9 0.659
1cbo FADCholesterol oxidase 1.1.3.6 0.658
3bnk FMNFlavoredoxin / 0.658
4fk8 FADFerredoxin--NADP reductase / 0.658
1a8p FADFerredoxin--NADP reductase / 0.656
4k1x FADNADPH:ferredoxin reductase / 0.655
1t6z RBFRiboflavin biosynthesis protein / 0.653
4l82 FMNUncharacterized protein / 0.653
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.653
3q9t FAYUncharacterized protein / 0.652
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.652
3rha FDAPutrescine oxidase / 0.651