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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2glx NDP 1,5-anhydro-D-fructose reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2glx NDP1,5-anhydro-D-fructose reductase / 1.349
1zh8 NAPUncharacterized protein / 0.876
5a02 NAPGlucose-fructose oxidoreductase / 0.871
5a04 NDPGlucose-fructose oxidoreductase / 0.842
5a06 NDPGlucose-fructose oxidoreductase / 0.831
1h6c NDPGlucose--fructose oxidoreductase 1.1.99.28 0.823
5a05 NDPGlucose-fructose oxidoreductase / 0.821
5a03 NDPGlucose-fructose oxidoreductase / 0.812
1h6d NDPGlucose--fructose oxidoreductase 1.1.99.28 0.797
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.795
1h6b NDPGlucose--fructose oxidoreductase 1.1.99.28 0.783
4koa NDP1,5-anhydro-D-fructose reductase 1.1.1.292 0.781
1ofg NDPGlucose--fructose oxidoreductase 1.1.99.28 0.772
3oa2 NADUDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase / 0.770
1h6a NDPGlucose--fructose oxidoreductase 1.1.99.28 0.766
1ryd NDPGlucose--fructose oxidoreductase 1.1.99.28 0.762
3q2k NAIProbable oxidoreductase / 0.748
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.726
2f1k NAPPrephenate dehydrogenase / 0.706
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.697
4y1b NAPAntE / 0.686
1yqx NAPSinapyl alcohol dehydrogenase / 0.684
3ikt NADRedox-sensing transcriptional repressor Rex / 0.678
3rbv NAPSugar 3-ketoreductase / 0.677
3tri NAPPyrroline-5-carboxylate reductase / 0.675
4gmg NAPYersiniabactin biosynthetic protein YbtU / 0.675
4oaq NDPR-specific carbonyl reductase / 0.674
5bsf NADPyrroline-5-carboxylate reductase / 0.674
1evj NADGlucose--fructose oxidoreductase 1.1.99.28 0.671
2rcy NAPPyrroline-5-carboxylate reductase / 0.667
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.666
1gl3 NDPAspartate-semialdehyde dehydrogenase / 0.664
4y0k NAPAntE / 0.662
1q0q NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.660
4y7c FADNADPH--cytochrome P450 reductase / 0.660
4yau FADNADPH--cytochrome P450 reductase / 0.657
1cf2 NAPGlyceraldehyde-3-phosphate dehydrogenase / 0.656
2oby NAPQuinone oxidoreductase PIG3 1 0.654
3etg NDPGlutamate dehydrogenase 1, mitochondrial 1.4.1.3 0.654
3iup NDPPossible NADH oxidoreductase / 0.653
2vhv NAIAlanine dehydrogenase 1.4.1.1 0.650
4c3s NADAldehyde Dehydrogenase / 0.650