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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bgi FAD NADPH:ferredoxin reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bgi FADNADPH:ferredoxin reductase / 1.462
2vnj FADNADPH:ferredoxin reductase / 1.238
2vnk FADNADPH:ferredoxin reductase / 1.236
2vnh FADNADPH:ferredoxin reductase / 1.120
2qdx FADFerredoxin--NADP+ reductase / 1.101
2bgj FADNADPH:ferredoxin reductase / 1.100
4b4d FADFerredoxin-NADP reductase / 1.088
3crz FADFerredoxin--NADP+ reductase / 1.069
4fk8 FADFerredoxin--NADP reductase / 1.018
4k1x FADNADPH:ferredoxin reductase / 1.018
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.855
1cqx FADFlavohemoprotein / 0.834
1a8p FADFerredoxin--NADP reductase / 0.830
2bf4 FADNADPH--cytochrome P450 reductase / 0.827
3qfs FADNADPH--cytochrome P450 reductase / 0.824
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.812
4y7c FADNADPH--cytochrome P450 reductase / 0.811
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.810
1amo FADNADPH--cytochrome P450 reductase / 0.804
2eix FADNADH-cytochrome b5 reductase / 0.795
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.778
4yaf FADNADPH--cytochrome P450 reductase / 0.778
3qe2 FADNADPH--cytochrome P450 reductase / 0.774
3qft FADNADPH--cytochrome P450 reductase / 0.761
3qfr FADNADPH--cytochrome P450 reductase / 0.758
1j9z FADNADPH--cytochrome P450 reductase / 0.753
4y9r FADNADPH--cytochrome P450 reductase / 0.753
2iml FMNUncharacterized protein / 0.752
3ojw FADNADPH--cytochrome P450 reductase / 0.748
2bn4 FADNADPH--cytochrome P450 reductase / 0.742
1ja1 FADNADPH--cytochrome P450 reductase / 0.735
2gpj FADSiderophore-interacting protein / 0.732
2hq9 FADMll6688 protein / 0.730
3qfc FADNADPH--cytochrome P450 reductase / 0.727
4y9u FADNADPH--cytochrome P450 reductase / 0.726
3ojx FADNADPH--cytochrome P450 reductase / 0.723
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.722
2ptf FMNUncharacterized protein MTH_863 / 0.709
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.708
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.706
2nr4 FMNConserved protein / 0.706
4f07 FADStyrene monooxygenase component 2 / 0.705
3in6 FMNUncharacterized protein / 0.704
1eje FMNProtein MTH_152 / 0.700
2bpo FADNADPH--cytochrome P450 reductase / 0.699
4yau FADNADPH--cytochrome P450 reductase / 0.699
4eep FMNPhototropin-2 2.7.11.1 0.698
4yao FADNADPH--cytochrome P450 reductase / 0.698
1tll FADNitric oxide synthase, brain 1.14.13.39 0.695
4eer FMNPhototropin-2 2.7.11.1 0.695
5cho FADFlavin reductase / 0.693
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.691
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.690
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.690
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.690
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.690
3pft FMNFlavin reductase / 0.688
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.688
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.686
2rc5 FADFerredoxin--NADP reductase / 0.684
1gvh FADFlavohemoprotein / 0.682
2pr5 FMNBlue-light photoreceptor / 0.681
3r5y F42Uncharacterized protein / 0.680
4eet FMNPhototropin-2 2.7.11.1 0.680
2pia FMNPhthalate dioxygenase reductase / 0.679
1usc FMNMonooxygenase / 0.677
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.676
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.673
1v5e FADPyruvate oxidase / 0.673
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.673
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.673
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.670
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.669
5efw FMNNPH1-1 / 0.669
1ja0 FADNADPH--cytochrome P450 reductase / 0.667
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.667
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.666
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.665
4hhd FMNPhototropin-1 2.7.11.1 0.664
1n9l FMNPutative blue light receptor / 0.663
2dji FADPyruvate oxidase / 0.663
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.662
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.660
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.660
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.660
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.659
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.659
3nix FADFlavoprotein/dehydrogenase / 0.659
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.657
3vo2 FADFerredoxin--NADP reductase / 0.657
4l82 FMNUncharacterized protein / 0.657
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.655
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.655
3a20 FMNFMN-binding protein / 0.653
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.652
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.650