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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ych FMN Nitric oxide reductase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ych FMNNitric oxide reductase 1 1.111
1ycg FMNNitric oxide reductase 1 1.003
1ycf FMNNitric oxide reductase 1 0.977
2ohi FMNType A flavoprotein FprA 1 0.950
2ohh FMNType A flavoprotein FprA 1 0.944
2ohj FMNType A flavoprotein FprA 1 0.916
2q9u FMNA-type flavoprotein / 0.900
3n39 FMNProtein NrdI / 0.769
1akw FMNFlavodoxin / 0.730
2fcr FMNFlavodoxin / 0.727
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.727
4bmo FMNProtein NrdI / 0.726
2b3d FADModulator of drug activity B / 0.722
2fx2 FMNFlavodoxin / 0.721
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.720
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.720
3n3b FMNProtein NrdI / 0.720
3qfr FMNNADPH--cytochrome P450 reductase / 0.719
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.718
1akr FMNFlavodoxin / 0.716
3f6s FMNFlavodoxin / 0.715
1czn FMNFlavodoxin / 0.712
4bmp FMNProtein NrdI / 0.711
4y7c FMNNADPH--cytochrome P450 reductase / 0.710
1ofv FMNFlavodoxin / 0.707
3qe2 FMNNADPH--cytochrome P450 reductase / 0.707
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.707
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.705
3n3a FMNProtein NrdI / 0.704
2v5v FMNFlavodoxin / 0.697
1j8q FMNFlavodoxin / 0.695
1vhn FMNtRNA-dihydrouridine synthase / 0.695
4oxx FMNCindoxin / 0.693
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.689
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.689
4j8p FMNFlavodoxin / 0.688
1t5b FMNFMN-dependent NADH-azoreductase / 0.687
3esz FMNFlavodoxin / 0.686
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.686
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.684
1j9g FMNFlavodoxin / 0.683
2v5u FMNFlavodoxin / 0.683
4yao FMNNADPH--cytochrome P450 reductase / 0.682
3rpe FADPutative modulator of drug activity / 0.681
4r81 FMNPredicted NADH dehydrogenase / 0.681
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.680
5tgz FMNCannabinoid receptor 1 / 0.680
5xra FMNCannabinoid receptor 1 / 0.680
1ja0 FMNNADPH--cytochrome P450 reductase / 0.679
1yob FMNFlavodoxin 2 / 0.676
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.676
2z9d FMNFMN-dependent NADH-azoreductase / 0.675
2bf4 FMNNADPH--cytochrome P450 reductase / 0.673
4nmc FADBifunctional protein PutA / 0.673
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.671
1c7f FMNFlavodoxin / 0.669
5xr8 FMNCannabinoid receptor 1 / 0.669
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.667
1amo FMNNADPH--cytochrome P450 reductase / 0.663
1ahn FMNFlavodoxin 1 / 0.662
3ojx FMNNADPH--cytochrome P450 reductase / 0.662
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.662
1xyv FMNFlavodoxin / 0.661
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.661
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.659
1fue FMNFlavodoxin / 0.658
3ojw FMNNADPH--cytochrome P450 reductase / 0.656
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.656
2bn4 FMNNADPH--cytochrome P450 reductase / 0.655
1aku FMNFlavodoxin / 0.654
1wsb FMNFlavodoxin / 0.652
1z48 FMNNADPH dehydrogenase / 0.652
3f6r FMNFlavodoxin / 0.652
4hs4 FMNChromate reductase / 0.652
4tmb FMNOld yellow enzyme / 0.650