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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ycf FMN Nitric oxide reductase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ycf FMNNitric oxide reductase 1 1.098
1ycg FMNNitric oxide reductase 1 1.012
1ych FMNNitric oxide reductase 1 0.977
2ohi FMNType A flavoprotein FprA 1 0.915
2ohh FMNType A flavoprotein FprA 1 0.909
2q9u FMNA-type flavoprotein / 0.854
2ohj FMNType A flavoprotein FprA 1 0.852
2fcr FMNFlavodoxin / 0.776
4bmo FMNProtein NrdI / 0.748
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.740
2fx2 FMNFlavodoxin / 0.736
1akw FMNFlavodoxin / 0.733
3n39 FMNProtein NrdI / 0.727
4j8p FMNFlavodoxin / 0.725
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.718
3n3b FMNProtein NrdI / 0.717
1fue FMNFlavodoxin / 0.710
3qfr FMNNADPH--cytochrome P450 reductase / 0.708
4bmp FMNProtein NrdI / 0.706
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.705
4y7c FMNNADPH--cytochrome P450 reductase / 0.703
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.702
2b3d FADModulator of drug activity B / 0.701
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.700
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.697
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.696
3n3a FMNProtein NrdI / 0.695
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.694
2v5v FMNFlavodoxin / 0.694
3ojx FMNNADPH--cytochrome P450 reductase / 0.694
1ofv FMNFlavodoxin / 0.693
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.692
2bf4 FMNNADPH--cytochrome P450 reductase / 0.691
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.691
4oxx FMNCindoxin / 0.689
5xr8 FMNCannabinoid receptor 1 / 0.689
3qe2 FMNNADPH--cytochrome P450 reductase / 0.688
1akr FMNFlavodoxin / 0.685
3in6 FMNUncharacterized protein / 0.684
3ojw FMNNADPH--cytochrome P450 reductase / 0.684
1amo FMNNADPH--cytochrome P450 reductase / 0.683
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.681
1yob FMNFlavodoxin 2 / 0.681
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.681
1czn FMNFlavodoxin / 0.677
3f6s FMNFlavodoxin / 0.676
4r81 FMNPredicted NADH dehydrogenase / 0.675
2h8x FMNXenA / 0.674
5tgz FMNCannabinoid receptor 1 / 0.674
1vhn FMNtRNA-dihydrouridine synthase / 0.673
3klb FMNUncharacterized protein / 0.673
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.672
1t5b FMNFMN-dependent NADH-azoreductase / 0.672
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.671
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.668
2z9d FMNFMN-dependent NADH-azoreductase / 0.668
2bn4 FMNNADPH--cytochrome P450 reductase / 0.667
3esz FMNFlavodoxin / 0.667
5xra FMNCannabinoid receptor 1 / 0.667
1fx1 FMNFlavodoxin / 0.666
1xyv FMNFlavodoxin / 0.665
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.662
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.662
2v5u FMNFlavodoxin / 0.662
2d29 FADAcyl-CoA dehydrogenase / 0.661
2w5u FMNFlavodoxin / 0.661
1c7f FMNFlavodoxin / 0.660
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.659
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.659
5cpm FNRNADH:flavin oxidoreductase / 0.656
4hs4 FMNChromate reductase / 0.655
3n19 FNRXenobiotic reductase / 0.654
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.654
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.654
4yao FMNNADPH--cytochrome P450 reductase / 0.653