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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wlk FMN FMN-binding protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wlk FMNFMN-binding protein / 1.094
3vy2 FMNFMN-binding protein / 1.031
3a6q FMNFMN-binding protein / 1.003
2e83 FMNFMN-binding protein / 0.998
1flm FMNFMN-binding protein / 0.994
3a6r FMNFMN-binding protein / 0.988
3amf FMNFMN-binding protein / 0.969
1wli FMNFMN-binding protein / 0.959
3a20 FMNFMN-binding protein / 0.952
3vy5 FMNFMN-binding protein / 0.940
3awh FMNFMN-binding protein / 0.938
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.724
3qe2 FADNADPH--cytochrome P450 reductase / 0.713
2bf4 FADNADPH--cytochrome P450 reductase / 0.706
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.705
3qfc FADNADPH--cytochrome P450 reductase / 0.704
2bgj FADNADPH:ferredoxin reductase / 0.703
1gaw FADFerredoxin / 0.702
3qfs FADNADPH--cytochrome P450 reductase / 0.701
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.698
2pia FMNPhthalate dioxygenase reductase / 0.697
3qfr FADNADPH--cytochrome P450 reductase / 0.697
1amo FADNADPH--cytochrome P450 reductase / 0.689
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.687
2vnk FADNADPH:ferredoxin reductase / 0.686
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.681
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.681
4yau FADNADPH--cytochrome P450 reductase / 0.681
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.678
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.678
3in6 FMNUncharacterized protein / 0.678
3r5y F42Uncharacterized protein / 0.678
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.676
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.676
4y9u FADNADPH--cytochrome P450 reductase / 0.676
2dji FADPyruvate oxidase / 0.674
2bn4 FADNADPH--cytochrome P450 reductase / 0.673
4y9r FADNADPH--cytochrome P450 reductase / 0.673
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.672
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.672
2bpo FADNADPH--cytochrome P450 reductase / 0.670
2rc5 FADFerredoxin--NADP reductase / 0.670
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.669
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.668
1usc FMNMonooxygenase / 0.667
2ptf FMNUncharacterized protein MTH_863 / 0.667
3qft FADNADPH--cytochrome P450 reductase / 0.667
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.665
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.665
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.665
4y7c FADNADPH--cytochrome P450 reductase / 0.665
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.664
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.664
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.663
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.663
2gmh FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.662
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.661
3pl8 FADPyranose 2-oxidase / 0.661
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.660
1v5e FADPyruvate oxidase / 0.660
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.659
3fpk FADFerredoxin-NADP reductase / 0.659
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.659
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.658
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.658
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.657
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.657
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.656
1pkv RBFRiboflavin synthase 2.5.1.9 0.656
4mok FADPyranose 2-oxidase / 0.656
1x0p FADTll0078 protein / 0.655
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.655
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.654
3crz FADFerredoxin--NADP+ reductase / 0.654
1ja1 FADNADPH--cytochrome P450 reductase / 0.652
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.652
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.652
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.652
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.651
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.651
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.650