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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1w34 FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.286
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.260
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.254
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.200
1que FADFerredoxin--NADP reductase 1.18.1.2 1.198
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.196
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.192
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.183
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.181
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.176
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.172
3vo2 FADFerredoxin--NADP reductase / 1.172
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.169
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.166
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.160
1gaw FADFerredoxin / 1.159
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.158
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.156
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.153
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.151
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.144
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.141
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.134
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.133
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.131
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.122
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.118
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.113
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.110
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.101
1gaq FADFerredoxin / 1.093
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.093
2rc6 FADFerredoxin--NADP reductase / 1.091
3w5u FADFerredoxin / 1.085
2rc5 FADFerredoxin--NADP reductase / 1.066
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.056
1sm4 FADFerredoxin--NADP reductase / 1.039
1f20 FADNitric oxide synthase, brain 1.14.13.39 1.034
4yaf FADNADPH--cytochrome P450 reductase / 1.032
1ja1 FADNADPH--cytochrome P450 reductase / 1.031
3qfc FADNADPH--cytochrome P450 reductase / 1.019
3qfs FADNADPH--cytochrome P450 reductase / 1.016
1w87 FADFerredoxin--NADP reductase 1.18.1.2 1.015
3qe2 FADNADPH--cytochrome P450 reductase / 0.999
1ja0 FADNADPH--cytochrome P450 reductase / 0.990
4y7c FADNADPH--cytochrome P450 reductase / 0.987
4y9u FADNADPH--cytochrome P450 reductase / 0.976
1tll FADNitric oxide synthase, brain 1.14.13.39 0.972
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.960
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.949
3ojw FADNADPH--cytochrome P450 reductase / 0.942
4y9r FADNADPH--cytochrome P450 reductase / 0.938
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.933
3qft FADNADPH--cytochrome P450 reductase / 0.932
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.929
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.923
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.916
3ojx FADNADPH--cytochrome P450 reductase / 0.909
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.897
1amo FADNADPH--cytochrome P450 reductase / 0.894
4yau FADNADPH--cytochrome P450 reductase / 0.890
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.889
1cqx FADFlavohemoprotein / 0.884
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.882
4yao FADNADPH--cytochrome P450 reductase / 0.877
1j9z FADNADPH--cytochrome P450 reductase / 0.870
2bf4 FADNADPH--cytochrome P450 reductase / 0.861
3fpk FADFerredoxin-NADP reductase / 0.856
3qfr FADNADPH--cytochrome P450 reductase / 0.841
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.831
2eix FADNADH-cytochrome b5 reductase / 0.829
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.808
2bpo FADNADPH--cytochrome P450 reductase / 0.797
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.791
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.789
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.785
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.784
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.766
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.766
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.764
2bn4 FADNADPH--cytochrome P450 reductase / 0.745
4fk8 FADFerredoxin--NADP reductase / 0.739
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.725
2vnh FADNADPH:ferredoxin reductase / 0.722
1gvh FADFlavohemoprotein / 0.720
2vnk FADNADPH:ferredoxin reductase / 0.719
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.715
3crz FADFerredoxin--NADP+ reductase / 0.712
4k1x FADNADPH:ferredoxin reductase / 0.708
2gpj FADSiderophore-interacting protein / 0.704
2bgj FADNADPH:ferredoxin reductase / 0.702
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.697
2vnj FADNADPH:ferredoxin reductase / 0.697
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.685
2qdx FADFerredoxin--NADP+ reductase / 0.682
4b4d FADFerredoxin-NADP reductase / 0.681
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.681
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.678
3r5z F42Uncharacterized protein / 0.674
3vy2 FMNFMN-binding protein / 0.666
1wlk FMNFMN-binding protein / 0.665
3a6q FMNFMN-binding protein / 0.663
5i39 FADL-amino acid deaminase / 0.663
3r5y F42Uncharacterized protein / 0.653
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.652
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.652
1gv4 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.650