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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1uqt U2F Trehalose-6-phosphate synthase 2.4.1.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1uqt U2FTrehalose-6-phosphate synthase 2.4.1.15 1.316
1uqu UPGTrehalose-6-phosphate synthase 2.4.1.15 1.201
4xsr UPGAlr3699 protein / 0.928
2iw1 U2FLipopolysaccharide core biosynthesis protein RfaG 2.4 0.846
2qzs ADPGlycogen synthase 2.4.1.21 0.777
3cx4 ADPGlycogen synthase 2.4.1.21 0.771
2r4u ADPGlycogen synthase 2.4.1.21 0.759
2r4t ADPGlycogen synthase 2.4.1.21 0.758
4f9f GDPPutative glycosyltransferase / 0.704
2g9r G27Glycogen phosphorylase, muscle form 2.4.1.1 0.698
2c1z U2FAnthocyanidin 3-O-glucosyltransferase 2 2.4.1.115 0.697
2j9f THV2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial 1.2.4.4 0.695
2j9f THV2-oxoisovalerate dehydrogenase subunit beta, mitochondrial 1.2.4.4 0.695
3cop ADPGlycogen synthase 2.4.1.21 0.691
2g9u G27Glycogen phosphorylase, muscle form 2.4.1.1 0.688
5gpb GPMGlycogen phosphorylase, muscle form 2.4.1.1 0.684
1w88 TDPPyruvate dehydrogenase E1 component subunit alpha 1.2.4.1 0.683
1w88 TDPPyruvate dehydrogenase E1 component subunit beta 1.2.4.1 0.683
3zhq TPPMultifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.675
3s2u UD1UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase / 0.674
2g9v IFMGlycogen phosphorylase, muscle form 2.4.1.1 0.673
3zhr TPPMultifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.673
3zht TD9Multifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.672
3zhs TD6Multifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.670
3zhv TDWMultifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.666
2c97 JCL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.652