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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qgy FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.383
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.340
1que FADFerredoxin--NADP reductase 1.18.1.2 1.321
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.288
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.286
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.281
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.278
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.273
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.265
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.254
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.253
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.252
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.251
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.242
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.242
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.239
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.232
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.222
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.216
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.214
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.210
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.205
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.205
1gaw FADFerredoxin / 1.200
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.198
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.193
3vo2 FADFerredoxin--NADP reductase / 1.193
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.192
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.189
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.186
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.184
2rc5 FADFerredoxin--NADP reductase / 1.143
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.142
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.131
2rc6 FADFerredoxin--NADP reductase / 1.127
1gaq FADFerredoxin / 1.104
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.101
3w5u FADFerredoxin / 1.093
1sm4 FADFerredoxin--NADP reductase / 1.079
3qfs FADNADPH--cytochrome P450 reductase / 1.065
4yaf FADNADPH--cytochrome P450 reductase / 1.011
3ojw FADNADPH--cytochrome P450 reductase / 1.006
3qfc FADNADPH--cytochrome P450 reductase / 1.006
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.997
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.995
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.992
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.988
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.986
1ja1 FADNADPH--cytochrome P450 reductase / 0.978
3qe2 FADNADPH--cytochrome P450 reductase / 0.973
4yau FADNADPH--cytochrome P450 reductase / 0.961
3qft FADNADPH--cytochrome P450 reductase / 0.957
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.956
1tll FADNitric oxide synthase, brain 1.14.13.39 0.939
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.928
4y7c FADNADPH--cytochrome P450 reductase / 0.922
1ja0 FADNADPH--cytochrome P450 reductase / 0.915
4y9u FADNADPH--cytochrome P450 reductase / 0.914
3qfr FADNADPH--cytochrome P450 reductase / 0.902
1cqx FADFlavohemoprotein / 0.894
2bf4 FADNADPH--cytochrome P450 reductase / 0.889
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.885
1j9z FADNADPH--cytochrome P450 reductase / 0.881
1amo FADNADPH--cytochrome P450 reductase / 0.878
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.875
3ojx FADNADPH--cytochrome P450 reductase / 0.858
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.857
4y9r FADNADPH--cytochrome P450 reductase / 0.848
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.824
2eix FADNADH-cytochrome b5 reductase / 0.822
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.816
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.814
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.809
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.802
4yao FADNADPH--cytochrome P450 reductase / 0.794
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.793
3fpk FADFerredoxin-NADP reductase / 0.779
2gpj FADSiderophore-interacting protein / 0.776
2pia FMNPhthalate dioxygenase reductase / 0.773
1gvh FADFlavohemoprotein / 0.772
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.771
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.771
4fk8 FADFerredoxin--NADP reductase / 0.769
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.764
2bn4 FADNADPH--cytochrome P450 reductase / 0.739
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.735
3crz FADFerredoxin--NADP+ reductase / 0.735
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.730
2ptf FMNUncharacterized protein MTH_863 / 0.723
3in6 FMNUncharacterized protein / 0.717
4k1x FADNADPH:ferredoxin reductase / 0.709
2iml FMNUncharacterized protein / 0.702
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.700
2vnh FADNADPH:ferredoxin reductase / 0.697
3q9t FAYUncharacterized protein / 0.697
2bpo FADNADPH--cytochrome P450 reductase / 0.693
1v5e FADPyruvate oxidase / 0.688
4ybn FADFlavin-nucleotide-binding protein / 0.685
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.674
3e4v FMNUncharacterized protein / 0.674
3a20 FMNFMN-binding protein / 0.672
2gv8 FADThiol-specific monooxygenase 1.14.13 0.671
2vnj FADNADPH:ferredoxin reductase / 0.671
2vnk FADNADPH:ferredoxin reductase / 0.669
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.668
2bgj FADNADPH:ferredoxin reductase / 0.667
3t37 FADPyridoxine 4-oxidase / 0.666
3vy5 FMNFMN-binding protein / 0.666
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.664
2bra FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.663
3a3b RBFLumazine protein / 0.663
3a6q FMNFMN-binding protein / 0.663
3vy2 FMNFMN-binding protein / 0.663
3a6r FMNFMN-binding protein / 0.660
3pft FMNFlavin reductase / 0.660
4hsu FADLysine-specific histone demethylase 1B 1 0.660
1rz1 FADPhenol 2-hydroxylase component B / 0.659
2bgi FADNADPH:ferredoxin reductase / 0.659
3mkh FADNitroalkane oxidase / 0.658
1flm FMNFMN-binding protein / 0.657
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.657
1usc FMNMonooxygenase / 0.656
2yg6 FADPutrescine oxidase / 0.656
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.655
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.654
4rhe FMNFlavin prenyltransferase UbiX / 0.653
1eje FMNProtein MTH_152 / 0.652
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.652
3awh FMNFMN-binding protein / 0.651