sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1pl6 | 572 | Sorbitol dehydrogenase | 1.1.1.14 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1pl6 | 572 | Sorbitol dehydrogenase | 1.1.1.14 | 0.941 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.661 | |
| 2bri | ANP | Uridylate kinase | 2.7.4.22 | 0.660 | |
| 2zue | ANP | Arginine--tRNA ligase | 6.1.1.19 | 0.660 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.660 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.660 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.660 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.660 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.660 | |
| 4ldj | GDP | GTPase KRas | / | 0.660 | |
| 4o3m | ADP | Bloom syndrome protein | 3.6.4.12 | 0.660 | |
| 4y8v | ADP | Acyl-CoA synthetase (NDP forming) | / | 0.660 | |
| 4yqf | GDP | Septin-9 | / | 0.660 | |
| 4z17 | PEP | Enolase | / | 0.660 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.660 | |
| 5cyo | GDP | Septin-9 | / | 0.660 | |
| 2z7q | ACP | Ribosomal protein S6 kinase alpha-1 | 2.7.11.1 | 0.659 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.658 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.657 | |
| 1gx1 | CDP | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 4.6.1.12 | 0.657 | |
| 3ftq | GNP | Septin-2 | / | 0.657 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.655 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.655 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.654 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.654 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.654 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.653 |