sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1p0f | NAP | NADP-dependent alcohol dehydrogenase | 1.1.1.2 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1p0f | NAP | NADP-dependent alcohol dehydrogenase | 1.1.1.2 | 1.172 | |
| 5kj1 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.803 | |
| 1axe | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.801 | |
| 1hld | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.789 | |
| 4dwv | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.789 | |
| 4gkv | NAD | Alcohol dehydrogenase, propanol-preferring | 1.1.1.1 | 0.786 | |
| 4oaq | NDP | R-specific carbonyl reductase | / | 0.782 | |
| 1agn | NAD | Alcohol dehydrogenase class 4 mu/sigma chain | 1.1.1.1 | 0.776 | |
| 5kcp | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.774 | |
| 4nfh | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.773 | |
| 5kcz | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.773 | |
| 3oq6 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.769 | |
| 4dxh | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.769 | |
| 1hsz | NAD | Alcohol dehydrogenase 1B | 1.1.1.1 | 0.764 | |
| 1h2b | NAJ | NAD-dependent alcohol dehydrogenase | / | 0.762 | |
| 2oxi | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.761 | |
| 1axg | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.760 | |
| 5cdg | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.758 | |
| 2ohx | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.755 | |
| 3cos | NAD | Alcohol dehydrogenase 4 | 1.1.1.1 | 0.754 | |
| 1mgo | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.750 | |
| 3wbf | NAP | Meso-diaminopimelate D-dehydrogenase | / | 0.750 | |
| 5a03 | NDP | Glucose-fructose oxidoreductase | / | 0.747 | |
| 3nx4 | NAP | Putative oxidoreductase | / | 0.746 | |
| 3two | NDP | Mannitol dehydrogenase | / | 0.746 | |
| 4xd2 | NAI | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.745 | |
| 5kjc | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.745 | |
| 5cds | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.744 | |
| 5cdt | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.744 | |
| 1yqd | NAP | Sinapyl alcohol dehydrogenase | / | 0.743 | |
| 1ht0 | NAD | Alcohol dehydrogenase 1C | 1.1.1.1 | 0.740 | |
| 1yqx | NAP | Sinapyl alcohol dehydrogenase | / | 0.738 | |
| 1u3v | NAD | Alcohol dehydrogenase 1B | 1.1.1.1 | 0.737 | |
| 5kje | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.735 | |
| 4nfs | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.732 | |
| 5kjf | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.730 | |
| 1adc | PAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.728 | |
| 1do8 | NAD | NAD-dependent malic enzyme, mitochondrial | 1.1.1.38 | 0.728 | |
| 3jv7 | NAD | Secondary alcohol dehydrogenase | / | 0.727 | |
| 1hf3 | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.724 | |
| 1lde | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.724 | |
| 2eer | NAD | NAD-dependent alcohol dehydrogenase | 1.1.1.1 | 0.721 | |
| 1yb5 | NAP | Quinone oxidoreductase | 1.6.5.5 | 0.720 | |
| 1h6a | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 0.719 | |
| 1h6c | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 0.717 | |
| 1h6d | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 0.717 | |
| 5kj6 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.717 | |
| 3h3j | NAD | L-lactate dehydrogenase 1 | 1.1.1.27 | 0.709 | |
| 3wbb | NAP | Meso-diaminopimelate D-dehydrogenase | / | 0.709 | |
| 1het | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.706 | |
| 1pj2 | NAI | NAD-dependent malic enzyme, mitochondrial | 1.1.1.38 | 0.705 | |
| 1hdz | NAD | Alcohol dehydrogenase 1B | 1.1.1.1 | 0.699 | |
| 1h6b | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 0.698 | |
| 4ng5 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.698 | |
| 1pj3 | NAD | NAD-dependent malic enzyme, mitochondrial | 1.1.1.38 | 0.695 | |
| 1a71 | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.691 | |
| 2y05 | NAP | Prostaglandin reductase 1 | / | 0.687 | |
| 4ywj | NAD | 4-hydroxy-tetrahydrodipicolinate reductase | / | 0.687 | |
| 5ees | NAP | 4-hydroxy-tetrahydrodipicolinate reductase | / | 0.683 | |
| 1efk | NAD | NAD-dependent malic enzyme, mitochondrial | 1.1.1.38 | 0.682 | |
| 4xrg | NAD | Homospermidine synthase | 2.5.1.44 | 0.682 | |
| 4okn | NAI | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.681 | |
| 3d4p | NAD | L-lactate dehydrogenase 1 | 1.1.1.27 | 0.680 | |
| 1efl | NAD | NAD-dependent malic enzyme, mitochondrial | 1.1.1.38 | 0.679 | |
| 4c4o | NAD | SADH | / | 0.678 | |
| 4b7x | NAP | Probable oxidoreductase | / | 0.677 | |
| 5a04 | NDP | Glucose-fructose oxidoreductase | / | 0.676 | |
| 5a05 | NDP | Glucose-fructose oxidoreductase | / | 0.676 | |
| 1nvm | NAD | Acetaldehyde dehydrogenase | 1.2.1.10 | 0.675 | |
| 2xaa | NAD | Secondary alcohol dehydrogenase | / | 0.674 | |
| 1heu | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.673 | |
| 3qwb | NDP | Probable quinone oxidoreductase | 1.6.5.5 | 0.673 | |
| 4k28 | NAD | Shikimate dehydrogenase family protein | / | 0.673 | |
| 1mp0 | NAD | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.672 | |
| 3wle | NAD | (R)-specific carbonyl reductase | / | 0.672 | |
| 4w6z | 8ID | Alcohol dehydrogenase 1 | 1.1.1.1 | 0.672 | |
| 5env | NAD | Alcohol dehydrogenase 1 | 1.1.1.1 | 0.672 | |
| 1adb | CND | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.671 | |
| 2zb3 | NDP | Prostaglandin reductase 2 | 1.3.1.48 | 0.671 | |
| 2jhf | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.669 | |
| 4xqc | NAD | Homospermidine synthase | 2.5.1.44 | 0.669 | |
| 1o6z | NAD | Malate dehydrogenase | / | 0.667 | |
| 2dbz | NAP | Glyoxylate reductase | 1.1.1.26 | 0.667 | |
| 3abi | NAD | Uncharacterized protein | / | 0.667 | |
| 4bv9 | NDP | Ketimine reductase mu-crystallin | 1.5.1.25 | 0.667 | |
| 1dap | NDP | Meso-diaminopimelate D-dehydrogenase | 1.4.1.16 | 0.666 | |
| 1nyt | NAP | Shikimate dehydrogenase (NADP(+)) | / | 0.666 | |
| 1uxk | NAD | Malate dehydrogenase | / | 0.665 | |
| 1ofg | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 0.663 | |
| 4xq9 | NAD | Homospermidine synthase | 2.5.1.44 | 0.663 | |
| 4rqu | NAD | Alcohol dehydrogenase class-P | / | 0.661 | |
| 3baz | NAP | Hydroxyphenylpyruvate reductase | 1.1.1.237 | 0.660 | |
| 4cpd | NAD | Alcohol dehydrogenase | / | 0.659 | |
| 5a02 | NAP | Glucose-fructose oxidoreductase | / | 0.659 | |
| 4j43 | NAD | Uncharacterized protein | / | 0.658 | |
| 1lld | NAD | L-lactate dehydrogenase 2 | 1.1.1.27 | 0.656 | |
| 1o8c | NDP | Probable acrylyl-CoA reductase AcuI | 1.3.1.84 | 0.656 | |
| 1teh | NAD | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.656 | |
| 1gq2 | NAP | NADP-dependent malic enzyme | 1.1.1.40 | 0.655 | |
| 4tvb | NAD | Homospermidine synthase | 2.5.1.44 | 0.655 | |
| 2cdc | NAP | Glucose 1-dehydrogenase | / | 0.654 | |
| 4ejm | NAP | Putative zinc-binding dehydrogenase | / | 0.654 | |
| 5a06 | NDP | Glucose-fructose oxidoreductase | / | 0.654 | |
| 2x0r | NAD | Malate dehydrogenase | / | 0.653 | |
| 2ydx | NAP | Methionine adenosyltransferase 2 subunit beta | / | 0.652 | |
| 4e5n | NAD | Phosphonate dehydrogenase | 1.20.1.1 | 0.652 | |
| 4hfm | NAP | 2-alkenal reductase (NADP(+)-dependent) | / | 0.652 | |
| 1f8f | NAD | Benzyl alcohol dehydrogenase | / | 0.651 | |
| 3kbo | NDP | Glyoxylate/hydroxypyruvate reductase A | / | 0.651 | |
| 1e3l | NAD | Alcohol dehydrogenase 4 | 1.1.1.1 | 0.650 | |
| 4wji | NAP | Putative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase | / | 0.650 |