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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nqw 5YL 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nqw 5YL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.411
1ejb INJ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.042
1nqx RLP6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.008
1nqv LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.994
1nqu RDL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.976
1w19 T2P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.870
2c92 TP66,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.841
2vi5 Y196,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.827
1w29 TS06,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.809
1w19 T5P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.806
1kyy INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.803
1w19 T4P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.789
1w19 T1P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.788
2c97 JCL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.785
1w29 TS16,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.780
1zis INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.764
2a57 CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.761
1t13 INI6,7-dimethyl-8-ribityllumazine synthase 2 / 0.757
2a59 LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.752
2o6h INI6,7-dimethyl-8-ribityllumazine synthase 1 2.5.1.78 0.748
2c94 TSF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.747
1kyx CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.739
1rvv INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.719
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.696
2obx INI6,7-dimethyl-8-ribityllumazine synthase 2 2.5.1.78 0.694
2f59 INI6,7-dimethyl-8-ribityllumazine synthase 1 / 0.652