2.300 Å
X-ray
2005-11-25
Name: | 6,7-dimethyl-8-ribityllumazine synthase 1 |
---|---|
ID: | RISB1_BRUAB |
AC: | Q57DY1 |
Organism: | Brucella abortus biovar 1 |
Reign: | Bacteria |
TaxID: | 262698 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 63 % |
E | 37 % |
B-Factor: | 30.889 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.051 | 489.375 |
% Hydrophobic | % Polar |
---|---|
67.59 | 32.41 |
According to VolSite |
HET Code: | INI |
---|---|
Formula: | C9H14N4O8 |
Molecular weight: | 306.229 g/mol |
DrugBank ID: | DB04162 |
Buried Surface Area: | 81.37 % |
Polar Surface area: | 196.96 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 7 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
98.2839 | 59.4756 | -91.6808 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2 | N | ALA- 53 | 2.66 | 146.36 | H-Bond (Protein Donor) |
C8 | CD1 | LEU- 54 | 4.2 | 0 | Hydrophobic |
C9 | CB | LEU- 54 | 3.44 | 0 | Hydrophobic |
O9 | N | LEU- 54 | 2.9 | 164.31 | H-Bond (Protein Donor) |
O10 | OE2 | GLU- 55 | 2.8 | 136.71 | H-Bond (Ligand Donor) |
N3 | O | THR- 82 | 2.74 | 160.59 | H-Bond (Ligand Donor) |
C8 | CG2 | VAL- 94 | 3.59 | 0 | Hydrophobic |
O11 | O | ASN- 115 | 2.9 | 169.56 | H-Bond (Ligand Donor) |
C12 | CB | ASN- 115 | 3.65 | 0 | Hydrophobic |
O12 | N | ASN- 115 | 2.95 | 167.84 | H-Bond (Protein Donor) |
O11 | NZ | LYS- 137 | 3.25 | 176.79 | H-Bond (Protein Donor) |
C12 | CD2 | PHE- 140 | 4.45 | 0 | Hydrophobic |
C11 | CE2 | PHE- 140 | 3.53 | 0 | Hydrophobic |
C12 | CB | ALA- 144 | 3.88 | 0 | Hydrophobic |
O2 | O | HOH- 306 | 2.54 | 179.97 | H-Bond (Protein Donor) |