Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nqu RDL 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nqu RDL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.003
1nqv LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.995
1nqw 5YL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.976
1nqx RLP6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.956
1kyx CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.881
1ejb INJ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.867
1w29 TS06,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.848
2a57 CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.839
1w29 TS16,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.819
2vi5 Y196,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.811
2a59 LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.805
1kyy INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.804
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.800
1w19 T5P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.798
1zis INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.793
1w19 T1P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.790
2c92 TP66,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.784
1t13 INI6,7-dimethyl-8-ribityllumazine synthase 2 / 0.774
2o6h INI6,7-dimethyl-8-ribityllumazine synthase 1 2.5.1.78 0.759
1w19 T2P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.753
4kq6 DLZ6,7-dimethyl-8-ribityllumazine synthase / 0.748
2a58 RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.745
1w19 T4P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.738
1rvv INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.733
2obx INI6,7-dimethyl-8-ribityllumazine synthase 2 2.5.1.78 0.713
2c94 TSF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.711
2f59 INI6,7-dimethyl-8-ribityllumazine synthase 1 / 0.693
2j6x FMNLactate oxidase / 0.669
2c9d PHR6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.666
2c9b PUG6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.653