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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1noi NTZ Glycogen phosphorylase, muscle form 2.4.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1noi NTZGlycogen phosphorylase, muscle form 2.4.1.1 0.863
3ms4 21NGlycogen phosphorylase, muscle form 2.4.1.1 0.782
5gpb GPMGlycogen phosphorylase, muscle form 2.4.1.1 0.782
2qrq S13Glycogen phosphorylase, muscle form 2.4.1.1 0.774
3mt8 17TGlycogen phosphorylase, muscle form 2.4.1.1 0.744
2g9u G27Glycogen phosphorylase, muscle form 2.4.1.1 0.741
2qln F59Glycogen phosphorylase, muscle form 2.4.1.1 0.737
2g9v IFMGlycogen phosphorylase, muscle form 2.4.1.1 0.734
2g9r G27Glycogen phosphorylase, muscle form 2.4.1.1 0.732
2qn3 F55Glycogen phosphorylase, muscle form 2.4.1.1 0.732
3g2h KOTGlycogen phosphorylase, muscle form 2.4.1.1 0.718
4el5 D1MGlycogen phosphorylase, muscle form 2.4.1.1 0.714
3g2l LEWGlycogen phosphorylase, muscle form 2.4.1.1 0.698
4kq2 1S3Glycogen [starch] synthase isoform 2 2.4.1.11 0.693
3l7d DK5Glycogen phosphorylase, muscle form 2.4.1.1 0.692
1k08 BZDGlycogen phosphorylase, muscle form 2.4.1.1 0.689
4el0 D1KGlycogen phosphorylase, muscle form 2.4.1.1 0.688
3zcs CAWGlycogen phosphorylase, muscle form 2.4.1.1 0.683
2qn7 HBZGlycogen phosphorylase, muscle form 2.4.1.1 0.682
2e40 LGCBeta-glucosidase 1A 3.2.1.21 0.658