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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1muu GDX GDP-mannose 6-dehydrogenase 1.1.1.132

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1muu GDXGDP-mannose 6-dehydrogenase 1.1.1.132 1.275
1mv8 GDXGDP-mannose 6-dehydrogenase 1.1.1.132 1.182
1mfz GDXGDP-mannose 6-dehydrogenase 1.1.1.132 1.017
3ptz UDXUDP-glucose 6-dehydrogenase 1.1.1.22 0.869
2qg4 UGAUDP-glucose 6-dehydrogenase 1.1.1.22 0.793
3gg2 UGASugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family / 0.783
1dli UDXUDP-glucose 6-dehydrogenase / 0.780
1dlj UGAUDP-glucose 6-dehydrogenase / 0.780
4edf UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.743
2q3e UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.733
2y0d UGAUDP-glucose dehydrogenase / 0.711
3tdk UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.708
3khu UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.671
5a02 NAPGlucose-fructose oxidoreductase / 0.670
5a03 NDPGlucose-fructose oxidoreductase / 0.667
5a04 NDPGlucose-fructose oxidoreductase / 0.667
1okk GCPSignal recognition particle protein / 0.662
1okk GCPSignal recognition particle receptor FtsY / 0.662
1evj NADGlucose--fructose oxidoreductase 1.1.99.28 0.654