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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mja COA Histone acetyltransferase ESA1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1mja COAHistone acetyltransferase ESA1 / 1.195
1fy7 COAHistone acetyltransferase ESA1 / 1.153
3to6 LYS_CMCHistone acetyltransferase ESA1 / 1.091
1mjb ACOHistone acetyltransferase ESA1 / 1.077
1mj9 COAHistone acetyltransferase ESA1 / 1.039
2ou2 ACOHistone acetyltransferase KAT5 / 1.002
2ozu ACOHistone acetyltransferase KAT6A / 0.983
2giv ACOHistone acetyltransferase KAT8 / 0.911
2y0m ACOHistone acetyltransferase KAT8 / 0.884
1qsr ACOHAT A1 / 0.819
2rc4 ACOHistone acetyltransferase KAT6A / 0.817
3d2m COAAmino-acid acetyltransferase / 0.815
1pu9 COAHAT A1 / 0.794
3exn ACOProbable acetyltransferase / 0.787
2jdd ACOProbable acetyltransferase / 0.782
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.774
5kf1 ACOPredicted acetyltransferase / 0.773
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.771
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.766
2jdc CAOProbable acetyltransferase / 0.764
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 0.755
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.752
5kgp ACOPredicted acetyltransferase / 0.748
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.747
3mgd ACOPredicted acetyltransferase / 0.743
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.743
5kgh ACOPredicted acetyltransferase / 0.741
3fbu COAAcetyltransferase, GNAT family / 0.740
4xpd ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.740
4r3k COAN-alpha-acetyltransferase 2.3.1 0.739
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.738
2fxf ACODiamine acetyltransferase 1 / 0.738
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.731
2r8v ACOAmino-acid acetyltransferase / 0.729
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.728
4b5p ACOAlpha-tubulin N-acetyltransferase 1 / 0.724
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 0.723
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.723
1wwz ACOUncharacterized protein / 0.720
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.716
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.711
1qsm ACOHistone acetyltransferase HPA2 / 0.710
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.710
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.709
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.709
2cnt COARibosomal-protein-alanine acetyltransferase / 0.706
3s6f COAUncharacterized protein / 0.703
2cy2 ACOProbable acetyltransferase / 0.702
1m1d LYXHAT A1 / 0.701
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.700
5kf2 ACOPredicted acetyltransferase / 0.700
1ghe ACOAcetyltransferase 2.3.1 0.699
1qsn COAHAT A1 / 0.697
2a4n COAAac(6')-Ii protein / 0.695
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.695
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.693
5kf8 ACOPredicted acetyltransferase / 0.693
3bj7 COADiamine acetyltransferase 1 / 0.690
3k9u ACOSpermidine N(1)-acetyltransferase / 0.690
2b3v ACODiamine acetyltransferase 1 / 0.689
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.687
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.686
3r95 ACOMccE protein / 0.683
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.681
1pua COAHAT A1 / 0.681
3d2p COAAmino-acid acetyltransferase / 0.681
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.680
3r96 ACOMccE protein / 0.677
1cjw COTSerotonin N-acetyltransferase / 0.676
1xa4 COAL-carnitine CoA-transferase / 0.675
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.675
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.669
1ib1 COTSerotonin N-acetyltransferase / 0.668
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.667
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.666
4crz ACOPanD regulatory factor / 0.665
3pgp ACOUncharacterized protein / 0.664
4psw COAHistone acetyltransferase type B catalytic subunit / 0.663
1s7n COAAcetyl transferase / 0.662
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.661
3tfy COAN-alpha-acetyltransferase 50 2.3.1 0.661
5kf9 ACOPredicted acetyltransferase / 0.661
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.657
2o28 COAGlucosamine 6-phosphate N-acetyltransferase / 0.655
3f0a ACOSpermidine N(1)-acetyltransferase / 0.655
2psw COAN-alpha-acetyltransferase 50 / 0.653
4qvt ACOAcetyltransferase YpeA 2.3.1 0.653
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.652
4kub COAUncharacterized protein / 0.650