1.900 Å
X-ray
2004-08-25
Name: | L-carnitine CoA-transferase |
---|---|
ID: | CAIB_ECOLI |
AC: | P31572 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 8 % |
B | 92 % |
B-Factor: | 21.121 |
---|---|
Number of residues: | 43 |
Including | |
Standard Amino Acids: | 40 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.424 | 340.875 |
% Hydrophobic | % Polar |
---|---|
51.49 | 48.51 |
According to VolSite |
HET Code: | COA |
---|---|
Formula: | C21H32N7O16P3S |
Molecular weight: | 763.502 g/mol |
DrugBank ID: | DB01992 |
Buried Surface Area: | 52.32 % |
Polar Surface area: | 426.11 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 21 |
H-Bond Donors: | 6 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 18 |
X | Y | Z |
---|---|---|
12.8103 | -3.86019 | -6.17844 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CCP | CD1 | ILE- 22 | 4.48 | 0 | Hydrophobic |
CEP | CG1 | ILE- 22 | 4.07 | 0 | Hydrophobic |
S1P | CB | GLU- 23 | 3.55 | 0 | Hydrophobic |
S1P | CB | ILE- 24 | 3.79 | 0 | Hydrophobic |
C2P | CB | ALA- 25 | 3.63 | 0 | Hydrophobic |
N3A | ND2 | ASN- 45 | 3.33 | 125.97 | H-Bond (Protein Donor) |
N6A | O | LEU- 71 | 2.86 | 167.87 | H-Bond (Ligand Donor) |
N1A | N | ILE- 73 | 3.43 | 151.56 | H-Bond (Protein Donor) |
C1B | CE2 | PHE- 74 | 4.37 | 0 | Hydrophobic |
O8A | NZ | LYS- 97 | 3.81 | 0 | Ionic (Protein Cationic) |
O9A | NZ | LYS- 97 | 3.07 | 0 | Ionic (Protein Cationic) |
O4A | NZ | LYS- 97 | 3.74 | 0 | Ionic (Protein Cationic) |
O5A | NZ | LYS- 97 | 2.56 | 0 | Ionic (Protein Cationic) |
O9A | NZ | LYS- 97 | 3.07 | 137.62 | H-Bond (Protein Donor) |
O5A | NZ | LYS- 97 | 2.56 | 134.95 | H-Bond (Protein Donor) |
CAP | CG | LYS- 97 | 3.99 | 0 | Hydrophobic |
O7A | CZ | ARG- 104 | 3.91 | 0 | Ionic (Protein Cationic) |
O7A | NH1 | ARG- 104 | 3.21 | 131.16 | H-Bond (Protein Donor) |
CDP | CB | PRO- 138 | 4.25 | 0 | Hydrophobic |
O9P | N | ALA- 139 | 3.28 | 173.64 | H-Bond (Protein Donor) |
N4P | O | ALA- 139 | 3.13 | 167.01 | H-Bond (Ligand Donor) |
CDP | CZ | TYR- 140 | 3.73 | 0 | Hydrophobic |
CEP | CE1 | TYR- 140 | 4.4 | 0 | Hydrophobic |
S1P | CB | ASP- 169 | 4.35 | 0 | Hydrophobic |
C6P | SD | MET- 200 | 3.93 | 0 | Hydrophobic |
O9P | O | HOH- 798 | 2.93 | 179.99 | H-Bond (Protein Donor) |
O9A | O | HOH- 887 | 2.61 | 179.96 | H-Bond (Protein Donor) |