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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kyx CRM 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kyx CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.080
1ejb INJ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.912
1nqv LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.907
2a57 CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.902
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.888
1nqu RDL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.881
1kyy INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.874
1w29 TS06,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.854
1nqx RLP6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.827
2vi5 Y196,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.794
1zis INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.791
4kq6 DLZ6,7-dimethyl-8-ribityllumazine synthase / 0.788
2a59 LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.787
2o6h INI6,7-dimethyl-8-ribityllumazine synthase 1 2.5.1.78 0.781
1t13 INI6,7-dimethyl-8-ribityllumazine synthase 2 / 0.775
1w19 T5P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.767
1w19 T1P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.745
1nqw 5YL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.739
2obx INI6,7-dimethyl-8-ribityllumazine synthase 2 2.5.1.78 0.737
1rvv INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.736
1w19 T4P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.721
2a58 RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.715
1w29 TS16,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.699
2c94 TSF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.699
1w19 T2P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.666
2f59 INI6,7-dimethyl-8-ribityllumazine synthase 1 / 0.655