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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kvs UPG UDP-glucose 4-epimerase 5.1.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 1.233
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 1.077
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 1.065
1kvu UPGUDP-glucose 4-epimerase 5.1.3.2 1.016
1ek6 UPGUDP-glucose 4-epimerase / 0.983
1kvt UPGUDP-glucose 4-epimerase 5.1.3.2 0.979
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 0.891
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 0.887
1i3k UPGUDP-glucose 4-epimerase / 0.872
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 0.845
1udc UFMUDP-glucose 4-epimerase 5.1.3.2 0.842
4zrn UPGUDP-glucose 4-epimerase, putative / 0.780
1hzj UD1UDP-glucose 4-epimerase / 0.743
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.737
1i3m UD1UDP-glucose 4-epimerase / 0.734
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.716
1i3l GDUUDP-glucose 4-epimerase / 0.709
1i3n UD1UDP-glucose 4-epimerase / 0.701
1sb8 UD2WbpP / 0.701
2pk3 GDDGDP-6-deoxy-D-mannose reductase / 0.694
3lu1 UD2UDP-N-acetylglucosamine 4-epimerase / 0.683
1lrl UPGUDP-glucose 4-epimerase 5.1.3.2 0.675
2c5e GDDGDP-mannose 3,5-epimerase 5.1.3.18 0.674
2gn4 UD1UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.668
3ruh UD6UDP-N-acetylglucosamine 4-epimerase / 0.660
1sb9 UPGWbpP / 0.658
3ruc UD2UDP-N-acetylglucosamine 4-epimerase / 0.658