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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1j9z FAD NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1j9z FADNADPH--cytochrome P450 reductase / 1.218
1ja0 FADNADPH--cytochrome P450 reductase / 1.089
3ojx FADNADPH--cytochrome P450 reductase / 1.060
3qfc FADNADPH--cytochrome P450 reductase / 1.056
3ojw FADNADPH--cytochrome P450 reductase / 1.053
1ja1 FADNADPH--cytochrome P450 reductase / 1.050
3qe2 FADNADPH--cytochrome P450 reductase / 1.048
3qfs FADNADPH--cytochrome P450 reductase / 1.038
4y7c FADNADPH--cytochrome P450 reductase / 1.030
4y9u FADNADPH--cytochrome P450 reductase / 1.029
4yaf FADNADPH--cytochrome P450 reductase / 1.005
1amo FADNADPH--cytochrome P450 reductase / 0.988
4yau FADNADPH--cytochrome P450 reductase / 0.980
4yao FADNADPH--cytochrome P450 reductase / 0.959
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.958
3qft FADNADPH--cytochrome P450 reductase / 0.951
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.949
3vo2 FADFerredoxin--NADP reductase / 0.943
2bf4 FADNADPH--cytochrome P450 reductase / 0.942
4y9r FADNADPH--cytochrome P450 reductase / 0.942
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.938
3qfr FADNADPH--cytochrome P450 reductase / 0.935
1gaw FADFerredoxin / 0.933
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.931
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.925
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.917
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.916
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.914
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.906
2rc6 FADFerredoxin--NADP reductase / 0.902
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.891
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.889
1que FADFerredoxin--NADP reductase 1.18.1.2 0.886
2bn4 FADNADPH--cytochrome P450 reductase / 0.883
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.881
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.881
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.878
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.878
3w5u FADFerredoxin / 0.878
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.875
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.872
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.871
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.870
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.869
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.868
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.865
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.864
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.863
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.863
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.859
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.859
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.853
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.848
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.847
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.842
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.841
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.839
1gaq FADFerredoxin / 0.834
2rc5 FADFerredoxin--NADP reductase / 0.833
4fk8 FADFerredoxin--NADP reductase / 0.827
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.827
1cqx FADFlavohemoprotein / 0.825
3crz FADFerredoxin--NADP+ reductase / 0.812
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.811
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.810
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.802
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.798
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.793
2vnj FADNADPH:ferredoxin reductase / 0.791
2eix FADNADH-cytochrome b5 reductase / 0.789
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.788
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.786
1sm4 FADFerredoxin--NADP reductase / 0.784
2bgj FADNADPH:ferredoxin reductase / 0.783
2vnh FADNADPH:ferredoxin reductase / 0.781
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.779
2qdx FADFerredoxin--NADP+ reductase / 0.775
4b4d FADFerredoxin-NADP reductase / 0.772
2vnk FADNADPH:ferredoxin reductase / 0.764
2pia FMNPhthalate dioxygenase reductase / 0.762
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.755
1tll FADNitric oxide synthase, brain 1.14.13.39 0.753
2bgi FADNADPH:ferredoxin reductase / 0.753
2bpo FADNADPH--cytochrome P450 reductase / 0.748
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.747
4k1x FADNADPH:ferredoxin reductase / 0.745
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.738
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.730
2hq9 FADMll6688 protein / 0.718
1gvh FADFlavohemoprotein / 0.710
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.707
2gpj FADSiderophore-interacting protein / 0.707
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.707
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.697
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.697
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.696
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.692
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.692
5cho FADFlavin reductase / 0.685
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.680
3e4v FMNUncharacterized protein / 0.680
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.678
3fpk FADFerredoxin-NADP reductase / 0.677
1rz0 FADPhenol 2-hydroxylase component B / 0.674
2nr4 FMNConserved protein / 0.674
1rz1 FADPhenol 2-hydroxylase component B / 0.670
2ptf FMNUncharacterized protein MTH_863 / 0.668
1pkv RBFRiboflavin synthase 2.5.1.9 0.666
1usc FMNMonooxygenase / 0.666
2dji FADPyruvate oxidase / 0.666
3a20 FMNFMN-binding protein / 0.665
3r5z F42Uncharacterized protein / 0.665
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.661
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.657
1eje FMNProtein MTH_152 / 0.656
3bnk FMNFlavoredoxin / 0.655