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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1iwi CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1iwi CAMCamphor 5-monooxygenase 1.14.15.1 0.844
1iwj CAMCamphor 5-monooxygenase 1.14.15.1 0.824
1noo CAHCamphor 5-monooxygenase 1.14.15.1 0.798
2m56 CAMCamphor 5-monooxygenase 1.14.15.1 0.789
2a1n CAMCamphor 5-monooxygenase 1.14.15.1 0.783
6cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.783
1uyu CAMCamphor 5-monooxygenase 1.14.15.1 0.777
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.776
2zaw CAMCamphor 5-monooxygenase 1.14.15.1 0.775
5cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.773
2qbn CAMCamphor 5-monooxygenase 1.14.15.1 0.768
3cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.768
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.768
2feu CAMCamphor 5-monooxygenase 1.14.15.1 0.764
4l49 CAMCamphor 5-monooxygenase 1.14.15.1 0.764
1o76 CAMCamphor 5-monooxygenase 1.14.15.1 0.763
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.763
2zui CAMCamphor 5-monooxygenase 1.14.15.1 0.762
2zax CAMCamphor 5-monooxygenase 1.14.15.1 0.761
1t86 CAMCamphor 5-monooxygenase 1.14.15.1 0.750
1t88 CAMCamphor 5-monooxygenase 1.14.15.1 0.749
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
2a1o CAMCamphor 5-monooxygenase 1.14.15.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
4l4b CAMCamphor 5-monooxygenase 1.14.15.1 0.743
1geb CAMCamphor 5-monooxygenase 1.14.15.1 0.740
2qbm CAMCamphor 5-monooxygenase 1.14.15.1 0.740
1dz8 CAMCamphor 5-monooxygenase 1.14.15.1 0.719
3fwi CAMCamphor 5-monooxygenase 1.14.15.1 0.710
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.705
3lxi CAMCytochrome P450 / 0.700
4kky CAMCamphor 5-monooxygenase 1.14.15.1 0.691
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.682
1yrc CAMCamphor 5-monooxygenase 1.14.15.1 0.668
3wrl CAMCamphor 5-monooxygenase 1.14.15.1 0.667
1phg MYTCamphor 5-monooxygenase 1.14.15.1 0.664
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4ek1 CAMCamphor 5-monooxygenase 1.14.15.1 0.650