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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1h6b NDP Glucose--fructose oxidoreductase 1.1.99.28

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1h6b NDPGlucose--fructose oxidoreductase 1.1.99.28 1.375
1h6a NDPGlucose--fructose oxidoreductase 1.1.99.28 1.347
1h6c NDPGlucose--fructose oxidoreductase 1.1.99.28 1.288
1h6d NDPGlucose--fructose oxidoreductase 1.1.99.28 1.233
1ryd NDPGlucose--fructose oxidoreductase 1.1.99.28 1.215
1ofg NDPGlucose--fructose oxidoreductase 1.1.99.28 1.194
5a02 NAPGlucose-fructose oxidoreductase / 1.104
5a05 NDPGlucose-fructose oxidoreductase / 1.054
5a06 NDPGlucose-fructose oxidoreductase / 1.036
1evj NADGlucose--fructose oxidoreductase 1.1.99.28 1.033
1rye NDPGlucose--fructose oxidoreductase 1.1.99.28 1.029
5a03 NDPGlucose-fructose oxidoreductase / 0.985
5a04 NDPGlucose-fructose oxidoreductase / 0.959
1zh8 NAPUncharacterized protein / 0.848
2glx NDP1,5-anhydro-D-fructose reductase / 0.783
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.780
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.755
3oa2 NADUDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase / 0.717
2h63 NAPBiliverdin reductase A 1.3.1.24 0.705
3ec7 NADInositol 2-dehydrogenase / 0.705
3w6u NAP6-phosphogluconate dehydrogenase, NAD-binding protein / 0.699
1p0f NAPNADP-dependent alcohol dehydrogenase 1.1.1.2 0.698
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.695
4pxz CLRP2Y purinoceptor 12 / 0.690
1yqd NAPSinapyl alcohol dehydrogenase / 0.688
1nvm NADAcetaldehyde dehydrogenase 1.2.1.10 0.683
3q2k NAIProbable oxidoreductase / 0.681
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.680
3m2t NADProbable dehydrogenase / 0.678
1il0 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.677
4gmg NAPYersiniabactin biosynthetic protein YbtU / 0.676
1mv8 GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.673
3adp NAILambda-crystallin 1.1.1.45 0.671
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.671
3mvq NDPGlutamate dehydrogenase 1, mitochondrial 1.4.1.3 0.668
1m76 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.667
2vq3 NAPMetalloreductase STEAP3 / 0.667
1qr6 NADNAD-dependent malic enzyme, mitochondrial 1.1.1.38 0.666
3two NDPMannitol dehydrogenase / 0.660
3tri NAPPyrroline-5-carboxylate reductase / 0.659
2c29 NAPDihydroflavonol 4-reductase / 0.657
1yjq NAP2-dehydropantoate 2-reductase 1.1.1.169 0.655
5bsg NAPPyrroline-5-carboxylate reductase / 0.655
4xgi NADGlutamate dehydrogenase / 0.654
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.653
1nc1 MTH5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3.2.2.9 0.652
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.652
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.652
2x86 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.652
3wfj NAD2-dehydropantoate 2-reductase / 0.652
4c3s NADAldehyde Dehydrogenase / 0.650