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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gvh FAD Flavohemoprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gvh FADFlavohemoprotein / 1.380
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.928
1cqx FADFlavohemoprotein / 0.894
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.885
2bf4 FADNADPH--cytochrome P450 reductase / 0.863
2bn4 FADNADPH--cytochrome P450 reductase / 0.859
3ojw FADNADPH--cytochrome P450 reductase / 0.853
2pia FMNPhthalate dioxygenase reductase / 0.851
1gaw FADFerredoxin / 0.840
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.838
3w5u FADFerredoxin / 0.832
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.830
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.830
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.828
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.819
3fpk FADFerredoxin-NADP reductase / 0.817
3qfr FADNADPH--cytochrome P450 reductase / 0.813
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.811
3qe2 FADNADPH--cytochrome P450 reductase / 0.810
3qfc FADNADPH--cytochrome P450 reductase / 0.808
1que FADFerredoxin--NADP reductase 1.18.1.2 0.807
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.806
1ja1 FADNADPH--cytochrome P450 reductase / 0.804
1tll FADNitric oxide synthase, brain 1.14.13.39 0.802
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.800
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.798
4yaf FADNADPH--cytochrome P450 reductase / 0.794
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.792
3qfs FADNADPH--cytochrome P450 reductase / 0.789
3ojx FADNADPH--cytochrome P450 reductase / 0.788
2eix FADNADH-cytochrome b5 reductase / 0.787
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.786
3vo2 FADFerredoxin--NADP reductase / 0.785
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.782
1a8p FADFerredoxin--NADP reductase / 0.781
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.779
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.778
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.776
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.776
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.775
4yao FADNADPH--cytochrome P450 reductase / 0.774
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.772
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.772
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.772
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.771
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.769
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.767
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.765
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.763
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.763
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.761
2rc5 FADFerredoxin--NADP reductase / 0.758
2qdx FADFerredoxin--NADP+ reductase / 0.757
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.756
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.752
1sm4 FADFerredoxin--NADP reductase / 0.752
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.750
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.743
4y7c FADNADPH--cytochrome P450 reductase / 0.742
1amo FADNADPH--cytochrome P450 reductase / 0.741
4y9u FADNADPH--cytochrome P450 reductase / 0.738
4yau FADNADPH--cytochrome P450 reductase / 0.737
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.732
2vnj FADNADPH:ferredoxin reductase / 0.730
3crz FADFerredoxin--NADP+ reductase / 0.729
3e4v FMNUncharacterized protein / 0.727
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.726
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.726
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.723
3qft FADNADPH--cytochrome P450 reductase / 0.723
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.721
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.720
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.719
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.718
1pkv RBFRiboflavin synthase 2.5.1.9 0.717
2vnk FADNADPH:ferredoxin reductase / 0.717
4b4d FADFerredoxin-NADP reductase / 0.717
4fk8 FADFerredoxin--NADP reductase / 0.717
2gpj FADSiderophore-interacting protein / 0.715
4y9r FADNADPH--cytochrome P450 reductase / 0.715
2rc6 FADFerredoxin--NADP reductase / 0.713
3d72 FADVivid PAS protein VVD / 0.713
1j9z FADNADPH--cytochrome P450 reductase / 0.710
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.710
2pr5 FMNBlue-light photoreceptor / 0.707
2bra FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.702
5cho FADFlavin reductase / 0.701
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.698
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.696
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.695
5buk FADFADH2-dependent halogenase / 0.695
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.693
4opl FDAConserved Archaeal protein / 0.690
4k1x FADNADPH:ferredoxin reductase / 0.689
2bpo FADNADPH--cytochrome P450 reductase / 0.688
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.685
1rz0 FADPhenol 2-hydroxylase component B / 0.683
2bgi FADNADPH:ferredoxin reductase / 0.682
3mzi FMNActivator of photopigment and puc expression / 0.681
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.681
4l82 FMNUncharacterized protein / 0.681
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.680
4txi FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.680
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.679
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.678
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.678
1n07 FMNRiboflavin kinase 2.7.1.26 0.677
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.675
4kuk RBFPutative blue-light photoreceptor / 0.675
4rhe FMNFlavin prenyltransferase UbiX / 0.675
4opg FDAConserved Archaeal protein / 0.673
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.672
1rz1 FADPhenol 2-hydroxylase component B / 0.671
1tj1 FADBifunctional protein PutA 1.5.5.2 0.671
1gaq FADFerredoxin / 0.670
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.669
4i6g FADCryptochrome-2 / 0.668
1usc FMNMonooxygenase / 0.667
2qa1 FADPgaE / 0.666
1n4u FAECholesterol oxidase 1.1.3.6 0.665
2hq9 FADMll6688 protein / 0.665
3cnj FADCholesterol oxidase 1.1.3.6 0.665
4r3a RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.664
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.663
4hj3 FMNLOV protein / 0.663
2yqu FADDihydrolipoyl dehydrogenase / 0.660
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.660
3oz2 FADDigeranylgeranylglycerophospholipid reductase / 0.659
3urh FADDihydrolipoyl dehydrogenase / 0.659
4jq9 FADDihydrolipoyl dehydrogenase / 0.659
4opu FDAConserved Archaeal protein / 0.659
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.657
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.656
1ja0 FADNADPH--cytochrome P450 reductase / 0.655
3pft FMNFlavin reductase / 0.655
4eep FMNPhototropin-2 2.7.11.1 0.655
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.654
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.651