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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fnb FAD Ferredoxin--NADP reductase, chloroplastic 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.363
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.321
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.296
1gaw FADFerredoxin / 1.270
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.266
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.253
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.247
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.239
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.237
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.235
1que FADFerredoxin--NADP reductase 1.18.1.2 1.211
3vo2 FADFerredoxin--NADP reductase / 1.206
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.205
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.191
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.190
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.186
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.185
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.184
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.181
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.179
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.176
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.175
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.173
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.168
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.167
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.162
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.142
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.142
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.141
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.130
2rc5 FADFerredoxin--NADP reductase / 1.116
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.115
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.110
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.109
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.100
1sm4 FADFerredoxin--NADP reductase / 1.097
2rc6 FADFerredoxin--NADP reductase / 1.094
3w5u FADFerredoxin / 1.091
1gaq FADFerredoxin / 1.059
3qfs FADNADPH--cytochrome P450 reductase / 1.032
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.990
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.988
1tll FADNitric oxide synthase, brain 1.14.13.39 0.988
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.980
4yau FADNADPH--cytochrome P450 reductase / 0.973
3ojw FADNADPH--cytochrome P450 reductase / 0.968
4yaf FADNADPH--cytochrome P450 reductase / 0.968
1ja1 FADNADPH--cytochrome P450 reductase / 0.962
4y9u FADNADPH--cytochrome P450 reductase / 0.960
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.957
4y7c FADNADPH--cytochrome P450 reductase / 0.948
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.937
1ja0 FADNADPH--cytochrome P450 reductase / 0.934
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.933
3qe2 FADNADPH--cytochrome P450 reductase / 0.930
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.927
1j9z FADNADPH--cytochrome P450 reductase / 0.925
3qfr FADNADPH--cytochrome P450 reductase / 0.915
3qfc FADNADPH--cytochrome P450 reductase / 0.902
1cqx FADFlavohemoprotein / 0.898
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.885
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.885
3ojx FADNADPH--cytochrome P450 reductase / 0.858
1amo FADNADPH--cytochrome P450 reductase / 0.846
3fpk FADFerredoxin-NADP reductase / 0.833
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.833
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.831
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.830
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.815
2eix FADNADH-cytochrome b5 reductase / 0.813
4y9r FADNADPH--cytochrome P450 reductase / 0.806
2pia FMNPhthalate dioxygenase reductase / 0.803
1gvh FADFlavohemoprotein / 0.800
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.799
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.794
4yao FADNADPH--cytochrome P450 reductase / 0.793
3qft FADNADPH--cytochrome P450 reductase / 0.783
2bpo FADNADPH--cytochrome P450 reductase / 0.768
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.753
2gpj FADSiderophore-interacting protein / 0.751
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.748
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.747
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.736
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.735
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.733
2bn4 FADNADPH--cytochrome P450 reductase / 0.721
2bf4 FADNADPH--cytochrome P450 reductase / 0.719
3in6 FMNUncharacterized protein / 0.719
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.713
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.711
4k1x FADNADPH:ferredoxin reductase / 0.707
2ptf FMNUncharacterized protein MTH_863 / 0.706
3pl8 FADPyranose 2-oxidase / 0.704
4fk8 FADFerredoxin--NADP reductase / 0.700
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.694
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.691
3k4c FADPyranose 2-oxidase / 0.687
5j60 FADThioredoxin reductase / 0.687
3a20 FMNFMN-binding protein / 0.686
3v76 FDAUncharacterized protein / 0.686
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.681
2vnh FADNADPH:ferredoxin reductase / 0.678
4gut FADLysine-specific histone demethylase 1B 1 0.678
3a6q FMNFMN-binding protein / 0.677
3vy2 FMNFMN-binding protein / 0.677
2yg6 FADPutrescine oxidase / 0.676
4ysh FADGlycine oxidase / 0.674
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.673
2wes FADTryptophan 5-halogenase / 0.672
3lsh FADPyranose 2-oxidase / 0.672
1usc FMNMonooxygenase / 0.671
3lsm SFDPyranose 2-oxidase / 0.670
3hdy FDAUDP-galactopyranose mutase / 0.669
3lov FADProtoporphyrinogen oxidase / 0.669
2igo FADPyranose 2-oxidase / 0.668
3a6r FMNFMN-binding protein / 0.664
1wli FMNFMN-binding protein / 0.663
1wlk FMNFMN-binding protein / 0.663
5hsa FASAlcohol oxidase 1 1.1.3.13 0.663
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.662
3fg2 FADPutative rubredoxin reductase / 0.661
4hsu FADLysine-specific histone demethylase 1B 1 0.661
2aqj FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.659
2hko FADLysine-specific histone demethylase 1A 1 0.659
2h94 FADLysine-specific histone demethylase 1A 1 0.658
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.657
4fwj FADLysine-specific histone demethylase 1B 1 0.656
4rek FADCholesterol oxidase 1.1.3.6 0.656
2bgi FADNADPH:ferredoxin reductase / 0.655
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.655
1h83 FADPolyamine oxidase 1.5.3.14 0.654
3nix FADFlavoprotein/dehydrogenase / 0.654
3t37 FADPyridoxine 4-oxidase / 0.654
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.652
2e83 FMNFMN-binding protein / 0.652
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.652
4u8n FDAUDP-galactopyranose mutase / 0.651
3ept FDAPutative FAD-monooxygenase / 0.650