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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ege FAD Medium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.512
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.938
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.927
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.924
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.923
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.895
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.876
2pg0 FADAcyl-CoA dehydrogenase / 0.860
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.844
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.843
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.842
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.838
5jsc FADPutative acyl-CoA dehydrogenase / 0.815
5af7 FADAcyl-CoA dehydrogenase / 0.811
3p4t FAOPutative acyl-CoA dehydrogenase / 0.805
2eba FADPutative glutaryl-CoA dehydrogenase / 0.804
3oib FDAPutative acyl-CoA dehydrogenase / 0.802
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.797
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.789
4m9a FDAAcyl-CoA dehydrogenase / 0.789
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.785
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.781
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.781
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.780
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.777
2d29 FADAcyl-CoA dehydrogenase / 0.770
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.764
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.756
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.739
1r2j FADFkbI / 0.736
3fcj FADNitroalkane oxidase 1.7.3.1 0.729
3r7k FDAProbable acyl CoA dehydrogenase / 0.720
2dvl FADAcyl-CoA dehydrogenase / 0.715
2fon FADAcyl-coenzyme A oxidase / 0.697
2z1q FADAcyl-CoA dehydrogenase / 0.697
4irn FADAnaB / 0.679
5ebu FMNLactate oxidase / 0.677
2fcr FMNFlavodoxin / 0.672
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 0.670
3n39 FMNProtein NrdI / 0.669
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.669
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.668
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.668
2nli FMNLactate oxidase / 0.663
1tdo FADL-amino-acid oxidase 1.4.3.2 0.659
2du2 FMNLactate oxidase / 0.659
2e77 FMNLactate oxidase / 0.659
4eer FMNPhototropin-2 2.7.11.1 0.659
1ycg FMNNitric oxide reductase 1 0.658
2cdu FADNADH oxidase / 0.658
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.658
3ah5 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.657
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.656
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.654
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.653
3w8w FADPutative FAD-dependent oxygenase EncM / 0.653
1bu5 RBFFlavodoxin / 0.650