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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bnw TPD Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.830
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.807
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.774
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.769
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.759
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.758
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.758
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.757
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.756
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.754
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.752
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.751
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.749
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.749
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.742
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.742
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.742
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.740
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.740
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.740
4uov AZMCarbonate dehydratase / 0.740
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.738
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.737
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.737
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.736
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.736
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.736
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.734
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.732
1okn STBCarbonic anhydrase 2 4.2.1.1 0.732
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.732
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.730
4xiw AZMCarbonic anhydrase, alpha type / 0.730
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.729
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.726
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.726
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.725
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.725
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.725
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.724
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.724
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.723
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.721
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.721
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.721
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.720
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.720
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.720
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.719
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.719
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.719
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.718
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.716
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.716
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.716
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.714
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.711
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.708
1okm SABCarbonic anhydrase 2 4.2.1.1 0.707
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.706
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.706
3mho J43Carbonic anhydrase 2 4.2.1.1 0.706
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.706
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.705
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.704
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.704
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.704
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.702
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.697
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.697
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.695
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.692
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.691
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.689
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.688
4hu1 V13Carbonic anhydrase 13 4.2.1.1 0.688
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.686
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.686
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.685
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.679
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.678
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.678
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.677
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.675
3da2 4MDCarbonic anhydrase 13 4.2.1.1 0.675
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.675
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.672
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.667
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.665
3sax E50Carbonic anhydrase 2 4.2.1.1 0.663
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.663
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.663
1yda AZMCarbonic anhydrase 2 4.2.1.1 0.662
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.661
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.660
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.656
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.653