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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bnt AL2 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.891
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.815
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.809
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.786
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.778
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.768
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.758
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.757
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.755
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.753
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.751
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.751
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.750
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.748
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.746
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.746
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.745
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.743
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.741
4uov AZMCarbonate dehydratase / 0.737
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.736
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.735
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.734
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.733
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.730
1okm SABCarbonic anhydrase 2 4.2.1.1 0.729
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.726
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.725
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.725
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.724
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.724
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.722
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.720
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.717
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.717
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.716
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.716
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.714
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.714
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.713
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.713
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.713
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.713
4xiw AZMCarbonic anhydrase, alpha type / 0.711
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.710
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.709
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.708
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.708
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.707
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.706
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.705
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.703
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.702
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.702
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.702
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.701
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.698
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.697
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.697
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.697
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.696
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.694
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.691
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.691
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.689
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.688
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.688
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.688
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.687
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.687
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.686
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.686
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.686
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.686
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.683
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.682
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.681
1okn STBCarbonic anhydrase 2 4.2.1.1 0.679
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.679
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.676
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.675
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.675
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.673
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.672
5fl4 9FKCarbonic anhydrase 9 4.2.1.1 0.672
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.671
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.668
3mho J43Carbonic anhydrase 2 4.2.1.1 0.663
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.660
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.657
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.655
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.655
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.655
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.655
2wd2 MS5Carbonic anhydrase 2 4.2.1.1 0.650
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.650