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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bn4 AL9 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.867
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.803
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.778
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.771
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.766
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.758
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.753
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.751
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.740
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.734
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.731
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.730
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.729
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.725
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.725
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.724
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.724
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.721
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.716
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.715
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.715
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.714
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.713
4xiw AZMCarbonic anhydrase, alpha type / 0.711
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.710
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.708
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.708
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.707
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.704
4uov AZMCarbonate dehydratase / 0.700
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.699
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.698
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.698
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.695
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.691
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.691
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.689
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.688
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.688
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.685
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.685
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.685
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.684
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.683
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.682
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.681
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.680
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.677
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.675
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.675
1okm SABCarbonic anhydrase 2 4.2.1.1 0.673
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.670
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.670
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.669
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.669
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.664
1okn STBCarbonic anhydrase 2 4.2.1.1 0.664
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.664
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.662
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.659
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.654
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.653
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.652
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.651