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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4c36ZO9cAMP-dependent protein kinase catalytic subunit alpha2.7.11.11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4c36ZO9cAMP-dependent protein kinase catalytic subunit alpha2.7.11.111.000
1q8uH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.530
3l9lL9LcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.526
3l9mL9McAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.526
3l9nL9NcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.525
2f7e2EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.517
2jdsL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.515
1ydrIQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.509
2oh02PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.502
2gnfY27cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.495
2jdvL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.495
1q8tY27cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.494
1ydtIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.485
4bgg844Activin receptor type-12.7.11.300.483
2ojf4PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.479
2uzwSS4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.476
2uw4L15cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.470
3kkvB99cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.470
2vo6M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.469
2gnhH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.465
2f7z6EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.464
2vo7M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.464
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.463
4c35NU3cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.463
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.462
3u9n09HSerine/threonine-protein kinase Chk12.7.11.10.460
3mtfA3FActivin receptor type-12.7.11.300.458
1xddAAYIntegrin alpha-L/0.454
2gnlH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.454
2uztSS3cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.453
2uzvSS5cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.451
4m9aFDAAcyl-CoA dehydrogenase/0.451
2uvyGVIcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.450
2g1r3IGRenin3.4.23.150.448
3vqhIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.448
4dymIYZActivin receptor type-12.7.11.300.448
3dndLL2cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.447
1q8wM77cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.445
3zo1SIJcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.442
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.441
4hyh1AMSerine/threonine-protein kinase Chk12.7.11.10.441
1w4lGL8Acetylcholinesterase3.1.1.70.440