scPDB - 3zo1 entry

Protein Data Bank Entry:

PDB ID : 3zo1

Resolution :2.000 Å

Experimental Method : X-ray

Deposition Date : 2013-02-20

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	cAMP-dependent protein kinase catalytic subunit alpha
ID:	KAPCA_BOVIN
AC:	P00517
Organism:	Bos taurus
Reign:	Eukaryota
TaxID:	9913
EC Number:	2.7.11.11

Chains:

Chain Name:	Percentage of Residues within binding site
A	96 %
I	4 %

Ligand binding site composition:

B-Factor:	24.919
Number of residues:	30
Including
Standard Amino Acids:	28
Non Standard Amino Acids:	0
Water Molecules:	2
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.905	820.125

% Hydrophobic	% Polar
42.80	57.20
According to VolSite

Ligand :

HET Code:	SIJ
Formula:	C14H21N6
Molecular weight:	273.357 g/mol
DrugBank ID:	-
Buried Surface Area:	72.77 %
Polar Surface area:	74.3 Å2

Number of
H-Bond Acceptors:	4
H-Bond Donors:	2
Rings:	4
Aromatic rings:	2
Anionic atoms:	0
Cationic atoms:	1
Rule of Five Violation:	0
Rotatable Bonds:	1

Mass center Coordinates

X	Y	Z
-29.1595	-9.67385	-3.6749

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C2	CB	LEU- 49	3.81	0	Hydrophobic	false
C10	CG1	VAL- 57	3.58	0	Hydrophobic	false
N4	O	GLU- 121	2.76	156.86	H-Bond (Ligand Donor)	false
N5	N	VAL- 123	2.96	176.48	H-Bond (Protein Donor)	false
C3	CG	GLU- 127	4.14	0	Hydrophobic	false
N2	OE2	GLU- 127	2.77	172.34	H-Bond (Ligand Donor)	false
N2	OE2	GLU- 127	2.77	0	Ionic (Ligand Cationic)	false
C3	CD2	LEU- 173	4.2	0	Hydrophobic	false
C9	CB	THR- 183	4.48	0	Hydrophobic	false
C2	CE1	PHE- 327	3.78	0	Hydrophobic	false
N2	O	HOH- 2224	2.92	172.69	H-Bond (Ligand Donor)	false