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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

2uvy

1.950 Å

X-ray

2007-03-15

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:cAMP-dependent protein kinase catalytic subunit alpha
ID:KAPCA_BOVIN
AC:P00517
Organism:Bos taurus
Reign:Eukaryota
TaxID:9913
EC Number:2.7.11.11


Chains:

Chain Name:Percentage of Residues
within binding site
A93 %
I7 %


Ligand binding site composition:

B-Factor:19.952
Number of residues:28
Including
Standard Amino Acids: 27
Non Standard Amino Acids: 0
Water Molecules: 1
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.038840.375

% Hydrophobic% Polar
54.2245.78
According to VolSite

Ligand :
2uvy_1 Structure
HET Code: GVI
Formula: C13H14N5
Molecular weight: 240.284 g/mol
DrugBank ID: DB07854
Buried Surface Area:73.63 %
Polar Surface area: 71.06 Å2
Number of
H-Bond Acceptors: 3
H-Bond Donors: 2
Rings: 3
Aromatic rings: 3
Anionic atoms: 0
Cationic atoms: 1
Rule of Five Violation: 0
Rotatable Bonds: 3

Mass center Coordinates

XYZ
6.873949.446563.77528


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C12CBLEU- 494.040Hydrophobic
C15CG2VAL- 573.70Hydrophobic
C14CG1VAL- 573.750Hydrophobic
N9OGLU- 1212.68161.65H-Bond
(Ligand Donor)
N3NALA- 1232.91173.34H-Bond
(Protein Donor)
C11CGGLU- 1274.230Hydrophobic
N10OE2GLU- 1272.65170.67H-Bond
(Ligand Donor)
N10OE2GLU- 1272.650Ionic
(Ligand Cationic)
N10OGLU- 1703.17121.43H-Bond
(Ligand Donor)
C12CEMET- 1733.40Hydrophobic
C14CG2THR- 1833.910Hydrophobic