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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zo4QWIcAMP-dependent protein kinase catalytic subunit alpha2.7.11.11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3zo4QWIcAMP-dependent protein kinase catalytic subunit alpha2.7.11.111.000
2jdtI5ScAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.610
2vo0M03cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.603
2vnwM01cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.599
2vo6M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.599
3zo1SIJcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.597
2f7e2EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.592
1q8wM77cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.590
3vqhIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.587
1sveI01cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.585
1xh6R94cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.585
4axaRKDcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.580
2vo7M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.579
2c1aI5ScAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.577
2gu8796cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.574
3dndLL2cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.574
2uw7GVPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.572
2uzwSS4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.572
1vebI05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.570
2vo3M04cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.570
3ow3SMYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.569
1xh7R96cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.568
2f7z6EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.566
2oh02PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.565
2jdsL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.564
2uzuL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.564
2uw5GVNcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.563
2uw0GVKcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.561
2uzvSS5cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.560
1q8uH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.559
1xh5R68cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.559
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.555
2uw6GVOcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.554
1xhaR68cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.553
2uztSS3cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.549
1ydtIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.548
2ojf4PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.548
1q8tY27cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.546
1svhI08cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.540
1svgI04cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.539
1ydrIQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.534
1xh8R55cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.528
1xh9R69cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.527
1xh4R69cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.526
1rejB1LcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.525
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.519
2gnhH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.514
2uvzGVJcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.511
3amaSKEcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.508
2uw4L15cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.504
3e8cG96cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.502
3aglA03cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.501
3e8eG98cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.498
2gnlH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.495
4yxsEMUcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.495
3bwjARXcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.490
3ambVX6cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.489
3dneLL1cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.488
2gnfY27cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.482
3mv5XFERAC-alpha serine/threonine-protein kinase2.7.11.10.480
3oogYTPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.477
3cqwCQWRAC-alpha serine/threonine-protein kinase2.7.11.10.476
4c34STUcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.474
1bx6BA1cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.460
3l9mL9McAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.460
4iazADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.457
4gv10XZRAC-alpha serine/threonine-protein kinase2.7.11.10.448
4iacACPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.445
1jbpADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.441
3kkvB99cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.440