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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zcxNADGlyceraldehyde-3-phosphate dehydrogenase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3zcxNADGlyceraldehyde-3-phosphate dehydrogenase/1.000
4boyNADGlyceraldehyde-3-phosphate dehydrogenase/0.646
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.599
4dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.595
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.570
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.570
2ep7NADGlyceraldehyde-3-phosphate dehydrogenase/0.566
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.560
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.558
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.557
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.555
2dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.554
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.554
1jn0NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.549
1vc2NADGlyceraldehyde-3-phosphate dehydrogenase/0.547
1dc6NADGlyceraldehyde-3-phosphate dehydrogenase A/0.544
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.544
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.541
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.541
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase/0.538
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.532
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.532
3gnqNADGlyceraldehyde-3-phosphate dehydrogenase/0.532
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.527
3l0dNADGlyceraldehyde-3-phosphate dehydrogenase/0.525
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.120.525
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.523
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.519
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.518
4o63NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.516
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.515
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.512
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.512
1szjNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.508
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.504
1ihxSNDGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.502
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.502
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase/0.495
1gadNADGlyceraldehyde-3-phosphate dehydrogenase A/0.488
2b4rNADGlyceraldehyde-3-phosphate dehydrogenase/0.487
3pymNADGlyceraldehyde-3-phosphate dehydrogenase 31.2.1.120.485
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.462
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.461
1vsvNADGlyceraldehyde-3-phosphate dehydrogenase/0.444
3frqERYErythromycin resistance repressor protein/0.442
1j0xNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.440
5bsgNAPPyrroline-5-carboxylate reductase/0.440