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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vqhIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3vqhIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.111.000
2jdtI5ScAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.609
1q8tY27cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.601
1ydrIQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.591
2ojf4PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.590
2vo6M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.577
1ydtIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.573
2uzwSS4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.570
2vo7M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.566
1q8wM77cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.565
1xh6R94cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.565
2oh02PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.565
2uzuL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.562
1q8uH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.559
3zo4QWIcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.556
1sveI01cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.554
3zo1SIJcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.554
2uw5GVNcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.546
2uzvSS5cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.546
2gu8796cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.545
2vo0M03cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.545
2f7z6EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.543
1svhI08cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.536
2f7e2EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.535
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.535
2vo3M04cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.531
1svgI04cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.527
2jdsL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.522
3dndLL2cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.515
2uw7GVPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.513
2c1aI5ScAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.512
2vnwM01cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.510
3ow3SMYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.509
1xhaR68cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.506
4axaRKDcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.504
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.501
1xh8R55cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.494
2uw0GVKcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.494
3amaSKEcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.493
2gnhH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.489
1xh5R68cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.486
1xh7R96cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.484
1xh4R69cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.483
1xh9R69cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.483
2gnlH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.475
2uw4L15cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.475
4yxsEMUcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.474
2uztSS3cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.471
1vebI05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.465
3e8cG96cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.463
2uw6GVOcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.459
3e8eG98cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.455
2uvzGVJcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.453
3ambVX6cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.451
3aglA03cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.446
3oogYTPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.444
3l9mL9McAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.443
1rejB1LcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.440