sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3qly | 55V | Uncharacterized protein |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3qly | 55V | Uncharacterized protein | / | 1.000 | |
| 3eem | 53V | Uncharacterized protein | / | 0.706 | |
| 3eej | 53R | Uncharacterized protein | / | 0.692 | |
| 3eel | 53T | Uncharacterized protein | / | 0.659 | |
| 3eek | 53S | Uncharacterized protein | / | 0.652 | |
| 3qlz | QLZ | Uncharacterized protein | / | 0.622 | |
| 3qlx | QLR | Uncharacterized protein | / | 0.609 | |
| 3inv | C50 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.587 | |
| 3cse | N22 | Uncharacterized protein | / | 0.577 | |
| 2fzi | DH3 | Dihydrofolate reductase | 1.5.1.3 | 0.576 | |
| 1cd2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.575 | |
| 3um5 | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.573 | |
| 3um6 | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.573 | |
| 1vj3 | TAB | Dihydrofolate reductase | 1.5.1.3 | 0.572 | |
| 1j3k | WRA | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.571 | |
| 1j3j | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.565 | |
| 1j3i | WRA | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.564 | |
| 2fzh | DH1 | Dihydrofolate reductase | 1.5.1.3 | 0.560 | |
| 3qg2 | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.556 | |
| 1m78 | CLZ | Dihydrofolate reductase | 1.5.1.3 | 0.553 | |
| 3qgt | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.548 | |
| 2blc | CP7 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.547 | |
| 1aoe | GW3 | Dihydrofolate reductase | 1.5.1.3 | 0.544 | |
| 3kjs | DQ1 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.543 | |
| 4h97 | 53S | Dihydrofolate reductase | 1.5.1.3 | 0.543 | |
| 3jsu | KA5 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.541 | |
| 3um8 | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.540 | |
| 4dpd | DHF | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.539 | |
| 4h98 | 14Q | Uncharacterized protein | / | 0.533 | |
| 3td8 | D2R | Dihydrofolate reductase | 1.5.1.3 | 0.532 | |
| 3irn | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.531 | |
| 2bl9 | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.530 | |
| 3qlw | N22 | Dihydrofolate reductase | 1.5.1.3 | 0.530 | |
| 3iro | 2CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.527 | |
| 4h95 | 06U | Dihydrofolate reductase | 1.5.1.3 | 0.526 | |
| 1ia1 | TQ3 | Dihydrofolate reductase | 1.5.1.3 | 0.525 | |
| 1ly3 | COG | Dihydrofolate reductase | 1.5.1.3 | 0.524 | |
| 3dga | RJ1 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.523 | |
| 3qfx | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.523 | |
| 3qls | 55V | Dihydrofolate reductase | 1.5.1.3 | 0.523 | |
| 4dph | P65 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.523 | |
| 4ixe | IXE | Dihydrofolate reductase | 1.5.1.3 | 0.520 | |
| 1daj | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.519 | |
| 4h96 | 14Q | Dihydrofolate reductase | 1.5.1.3 | 0.518 | |
| 2cd2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.516 | |
| 3dg8 | RJ6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.515 | |
| 1e26 | GPB | Dihydrofolate reductase | 1.5.1.3 | 0.514 | |
| 3qlr | QLR | Dihydrofolate reductase | 1.5.1.3 | 0.513 | |
| 3clb | TMQ | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.512 | |
| 4ixf | IXF | Dihydrofolate reductase | 1.5.1.3 | 0.507 | |
| 3cd2 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.506 | |
| 2blb | CP7 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.505 | |
| 1m7a | MQU | Dihydrofolate reductase | 1.5.1.3 | 0.503 | |
| 4eil | FOL | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.501 | |
| 4ixg | IXG | Dihydrofolate reductase | 1.5.1.3 | 0.501 | |
| 3dga | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.498 | |
| 3irm | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.498 | |
| 1klk | PMD | Dihydrofolate reductase | 1.5.1.3 | 0.494 | |
| 2cig | 1DG | Dihydrofolate reductase | 1.5.1.3 | 0.494 | |
| 2bla | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.493 | |
| 4ky4 | 04J | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.491 | |
| 4m6l | 21V | Dihydrofolate reductase | 1.5.1.3 | 0.491 | |
| 3dfr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.490 | |
| 1ly4 | COQ | Dihydrofolate reductase | 1.5.1.3 | 0.488 | |
| 1s3y | TQT | Dihydrofolate reductase | 1.5.1.3 | 0.488 | |
| 2zza | FOL | Dihydrofolate reductase | / | 0.486 | |
| 4cd2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.483 | |
| 1hfq | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.482 | |
| 3eig | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.481 | |
| 1dg5 | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.478 | |
| 1kms | LIH | Dihydrofolate reductase | 1.5.1.3 | 0.477 | |
| 2w3v | TOP | Dihydrofolate reductase | / | 0.477 | |
| 4dp3 | MMV | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.477 | |
| 1og5 | SWF | Cytochrome P450 2C9 | / | 0.473 | |
| 1ia3 | TQ5 | Dihydrofolate reductase | 1.5.1.3 | 0.472 | |
| 3inv | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.472 | |
| 3ia4 | MTX | Dihydrofolate reductase | / | 0.469 | |
| 3ghv | GHC | Dihydrofolate reductase | 1.5.1.3 | 0.465 | |
| 3n0h | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.465 | |
| 3s3v | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.463 | |
| 3jw5 | TOP | Dihydrofolate reductase | / | 0.460 | |
| 1ia2 | TQ4 | Dihydrofolate reductase | 1.5.1.3 | 0.459 | |
| 3qls | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.459 | |
| 1dg7 | WRB | Dihydrofolate reductase | 1.5.1.3 | 0.458 | |
| 3ix9 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.455 | |
| 4kak | 06U | Dihydrofolate reductase | 1.5.1.3 | 0.454 | |
| 1rx3 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.452 | |
| 4nx7 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.452 | |
| 2po7 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.451 | |
| 3nrr | D16 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.451 | |
| 4m2x | TMQ | Dihydrofolate reductase | 1.5.1.3 | 0.451 | |
| 1m79 | MQ1 | Dihydrofolate reductase | 1.5.1.3 | 0.449 | |
| 2w3m | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.449 | |
| 3jwc | EKB | Dihydrofolate reductase | / | 0.449 | |
| 3qlr | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.449 | |
| 3tqb | FOL | Dihydrofolate reductase | / | 0.449 | |
| 1ohk | COP | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 2fzj | DH3 | Dihydrofolate reductase | 1.5.1.3 | 0.444 | |
| 3ghw | GHW | Dihydrofolate reductase | 1.5.1.3 | 0.444 | |
| 2aqk | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.443 | |
| 3d80 | Q22 | Dihydrofolate reductase | 1.5.1.3 | 0.443 | |
| 4kbn | 25U | Dihydrofolate reductase | 1.5.1.3 | 0.443 | |
| 1ia4 | TQ6 | Dihydrofolate reductase | 1.5.1.3 | 0.442 | |
| 3dg8 | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.442 | |
| 3l3r | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.441 |