sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3o6o | 94M | Heat shock protein 83 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3o6o | 94M | Heat shock protein 83 | / | 1.000 | |
| 1uye | PU9 | Heat shock protein HSP 90-alpha | / | 0.635 | |
| 1uym | PU3 | Heat shock protein HSP 90-beta | / | 0.632 | |
| 1uy9 | PU6 | Heat shock protein HSP 90-alpha | / | 0.625 | |
| 2fwy | H64 | Heat shock protein HSP 90-alpha | / | 0.622 | |
| 4hy6 | FJ1 | Heat shock protein HSP 90-alpha | / | 0.621 | |
| 3o0i | P54 | Heat shock protein HSP 90-alpha | / | 0.615 | |
| 2fwz | H71 | Heat shock protein HSP 90-alpha | / | 0.611 | |
| 3ft8 | MOJ | Heat shock protein HSP 90-alpha | / | 0.609 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.608 | |
| 2h55 | DZ8 | Heat shock protein HSP 90-alpha | / | 0.603 | |
| 1uyd | PU8 | Heat shock protein HSP 90-alpha | / | 0.600 | |
| 2ykj | YKJ | Heat shock protein HSP 90-alpha | / | 0.599 | |
| 3inw | JZB | Heat shock protein HSP 90-alpha | / | 0.599 | |
| 2yee | 2EC | Heat shock protein HSP 90-alpha | / | 0.595 | |
| 1uyk | PUX | Heat shock protein HSP 90-alpha | / | 0.593 | |
| 1uyf | PU1 | Heat shock protein HSP 90-alpha | / | 0.592 | |
| 1uy6 | PU3 | Heat shock protein HSP 90-alpha | / | 0.591 | |
| 3inx | JZC | Heat shock protein HSP 90-alpha | / | 0.589 | |
| 3hz1 | 37D | Heat shock protein HSP 90-alpha | / | 0.588 | |
| 3hz5 | Z64 | Heat shock protein HSP 90-alpha | / | 0.587 | |
| 2yke | YKE | Heat shock protein HSP 90-alpha | / | 0.586 | |
| 4nh8 | 2LC | Heat shock protein HSP 90-alpha | / | 0.586 | |
| 2ykc | YKC | Heat shock protein HSP 90-alpha | / | 0.583 | |
| 1uyh | PU0 | Heat shock protein HSP 90-alpha | / | 0.582 | |
| 1uy7 | PU4 | Heat shock protein HSP 90-alpha | / | 0.579 | |
| 2yjx | YJX | Heat shock protein HSP 90-alpha | / | 0.578 | |
| 2yk2 | YJX | Heat shock protein HSP 90-alpha | / | 0.573 | |
| 3mnr | SD1 | Heat shock protein HSP 90-alpha | / | 0.572 | |
| 2yki | YKI | Heat shock protein HSP 90-alpha | / | 0.571 | |
| 4bqg | 50Q | Heat shock protein HSP 90-alpha | / | 0.571 | |
| 1uyc | PU7 | Heat shock protein HSP 90-alpha | / | 0.565 | |
| 3qdd | 94M | Heat shock protein HSP 90-alpha | / | 0.564 | |
| 2qg2 | A91 | Heat shock protein HSP 90-alpha | / | 0.563 | |
| 2ykb | YKB | Heat shock protein HSP 90-alpha | / | 0.561 | |
| 2wi4 | ZZ4 | Heat shock protein HSP 90-alpha | / | 0.555 | |
| 2wi7 | 2KL | Heat shock protein HSP 90-alpha | / | 0.553 | |
| 1uyi | PUZ | Heat shock protein HSP 90-alpha | / | 0.549 | |
| 4efu | EFU | Heat shock protein HSP 90-alpha | / | 0.548 | |
| 4eft | EFT | Heat shock protein HSP 90-alpha | / | 0.537 | |
| 4awo | 99B | Heat shock protein HSP 90-alpha | / | 0.515 | |
| 3hz1 | 42C | Heat shock protein HSP 90-alpha | / | 0.514 | |
| 2yei | XQI | Heat shock protein HSP 90-alpha | / | 0.512 | |
| 3d0b | SNX | Heat shock protein HSP 90-alpha | / | 0.511 | |
| 2yk2 | YJW | Heat shock protein HSP 90-alpha | / | 0.509 | |
| 4awp | 99A | Heat shock protein HSP 90-alpha | / | 0.506 | |
| 4awq | 592 | Heat shock protein HSP 90-alpha | / | 0.500 | |
| 2yej | XQK | Heat shock protein HSP 90-alpha | / | 0.488 | |
| 2yej | ZZ3 | Heat shock protein HSP 90-alpha | / | 0.484 | |
| 3q5k | D1U | Heat shock protein 83-1 | / | 0.461 | |
| 1zw9 | H64 | ATP-dependent molecular chaperone HSP82 | / | 0.456 | |
| 1guf | NDP | Enoyl-[acyl-carrier-protein] reductase 1, mitochondrial | 1.3.1.10 | 0.447 | |
| 2hyd | ADP | Putative multidrug export ATP-binding/permease protein SAV1866 | 3.6.3 | 0.447 |