sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3jq7	DX2	Pteridine reductase, putative

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3jq7	DX2	Pteridine reductase, putative	/	1.000
3jqb	DX6	Pteridine reductase, putative	/	0.601
3jqg	AX6	Pteridine reductase, putative	/	0.579
3bmn	AX3	Pteridine reductase	/	0.528
3mcv	MCV	Pteridine reductase	/	0.514
3jq9	AX1	Pteridine reductase, putative	/	0.507
3bmq	AX5	Pteridine reductase	/	0.491
2x9n	AX3	Pteridine reductase	/	0.482
2wd7	VGD	Pteridine reductase	/	0.478
3jq8	DX3	Pteridine reductase, putative	/	0.469
2yhu	WHF	Pteridine reductase	/	0.460
3jq6	DX1	Pteridine reductase, putative	/	0.451
2x9g	LYA	Pteridine reductase	/	0.448
3bmc	FOL	Pteridine reductase	/	0.440