1.800 Å
X-ray
2009-09-06
Name: | Pteridine reductase, putative |
---|---|
ID: | Q581W1_TRYB2 |
AC: | Q581W1 |
Organism: | Trypanosoma brucei brucei |
Reign: | Eukaryota |
TaxID: | 185431 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 26.754 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | NAP |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.795 | 884.250 |
% Hydrophobic | % Polar |
---|---|
45.04 | 54.96 |
According to VolSite |
HET Code: | DX2 |
---|---|
Formula: | C12H11N7 |
Molecular weight: | 253.263 g/mol |
DrugBank ID: | DB00384 |
Buried Surface Area: | 74.55 % |
Polar Surface area: | 129.62 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
-17.5657 | 17.1515 | 3.75747 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N2 | OG | SER- 95 | 2.72 | 155.51 | H-Bond (Ligand Donor) |
DuAr | DuAr | PHE- 97 | 3.79 | 0 | Aromatic Face/Face |
DuAr | DuAr | PHE- 97 | 3.86 | 0 | Aromatic Face/Face |
N4 | OH | TYR- 174 | 2.75 | 162.16 | H-Bond (Ligand Donor) |
CAF | CG2 | VAL- 206 | 4.23 | 0 | Hydrophobic |
CAG | CD2 | LEU- 209 | 3.51 | 0 | Hydrophobic |
CAE | CG | LEU- 209 | 4.01 | 0 | Hydrophobic |
CAD | CD2 | LEU- 209 | 3.24 | 0 | Hydrophobic |
CAG | CG | PRO- 210 | 3.96 | 0 | Hydrophobic |
CAE | CE | MET- 213 | 4.26 | 0 | Hydrophobic |
N1 | O2A | NAP- 269 | 2.75 | 157.45 | H-Bond (Ligand Donor) |
N2 | O2A | NAP- 269 | 3.16 | 134.85 | H-Bond (Ligand Donor) |
N3 | O2D | NAP- 269 | 2.71 | 156.98 | H-Bond (Protein Donor) |