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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ivgFG5Pantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ivgFG5Pantothenate synthetase6.3.2.11.000
3imgBZ3Pantothenate synthetase6.3.2.10.678
3imeBZ2Pantothenate synthetase6.3.2.10.675
3iodA6DPantothenate synthetase6.3.2.10.673
3iobA4DPantothenate synthetase6.3.2.10.647
3imgBZ2Pantothenate synthetase6.3.2.10.646
4ddhMS0Pantothenate synthetase6.3.2.10.641
3isjA8DPantothenate synthetase6.3.2.10.631
3coz54HPantothenate synthetase6.3.2.10.617
3coy53HPantothenate synthetase6.3.2.10.582
1n2hPAJPantothenate synthetase6.3.2.10.577
3iocA5DPantothenate synthetase6.3.2.10.575
1n2iPAJPantothenate synthetase6.3.2.10.568
3ivxFG6Pantothenate synthetase6.3.2.10.540
2x3fAPCPantothenate synthetase/0.529
3cow52HPantothenate synthetase6.3.2.10.527
1n2jPAFPantothenate synthetase6.3.2.10.525
3ioeA7DPantothenate synthetase6.3.2.10.516
5kwvANPPantothenate synthetase/0.484
1n2gAPCPantothenate synthetase6.3.2.10.472