Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iodA6DPantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3iodA6DPantothenate synthetase6.3.2.11.000
3iobA4DPantothenate synthetase6.3.2.10.707
3imeBZ2Pantothenate synthetase6.3.2.10.655
3imgBZ3Pantothenate synthetase6.3.2.10.616
3imgBZ2Pantothenate synthetase6.3.2.10.615
3ivgFG5Pantothenate synthetase6.3.2.10.601
4ddhMS0Pantothenate synthetase6.3.2.10.564
3coy53HPantothenate synthetase6.3.2.10.556
3iocA5DPantothenate synthetase6.3.2.10.553
3coz54HPantothenate synthetase6.3.2.10.547
3isjA8DPantothenate synthetase6.3.2.10.538
1n2hPAJPantothenate synthetase6.3.2.10.482
1n2iPAJPantothenate synthetase6.3.2.10.466
3ioeA7DPantothenate synthetase6.3.2.10.463
2x3fAPCPantothenate synthetase/0.458
3cow52HPantothenate synthetase6.3.2.10.452
1n2jPAFPantothenate synthetase6.3.2.10.450