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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3imeBZ2Pantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3imeBZ2Pantothenate synthetase6.3.2.11.000
3iodA6DPantothenate synthetase6.3.2.10.728
4ddhMS0Pantothenate synthetase6.3.2.10.714
3isjA8DPantothenate synthetase6.3.2.10.704
3iobA4DPantothenate synthetase6.3.2.10.701
3imgBZ3Pantothenate synthetase6.3.2.10.687
3imgBZ2Pantothenate synthetase6.3.2.10.681
3ivgFG5Pantothenate synthetase6.3.2.10.678
3coz54HPantothenate synthetase6.3.2.10.640
3coy53HPantothenate synthetase6.3.2.10.633
3iocA5DPantothenate synthetase6.3.2.10.612
1n2hPAJPantothenate synthetase6.3.2.10.557
1n2iPAJPantothenate synthetase6.3.2.10.534
1n2jPAFPantothenate synthetase6.3.2.10.530
3cow52HPantothenate synthetase6.3.2.10.507
3ioeA7DPantothenate synthetase6.3.2.10.499
5kwvANPPantothenate synthetase/0.496
3ivxFG6Pantothenate synthetase6.3.2.10.495
1n2gAPCPantothenate synthetase6.3.2.10.476
2x3fAPCPantothenate synthetase/0.476
5hg0SAMPantothenate synthetase/0.474