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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3g11P9C3-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.179

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3g11P9C3-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.1791.000
3g0yP9A3-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.1790.621
3i8p8403-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.1790.615
2gfxPMN3-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.1790.611
2aq7TL53-oxoacyl-[acyl-carrier-protein] synthase 12.3.1.410.588
3hnzPMN3-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.1790.585
3ho2N323-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.1790.570
4c717RD3-oxoacyl-ACP synthase/0.568
2aqbTL63-oxoacyl-[acyl-carrier-protein] synthase 12.3.1.410.556
4c72TLG3-oxoacyl-ACP synthase/0.550
4f32N323-oxoacyl-[acyl-carrier-protein] synthase 2/0.543
4c73TLH3-oxoacyl-ACP synthase/0.537
2vb8TLM3-oxoacyl-[acyl-carrier-protein] synthase 12.3.1.410.526
4c6zTLE3-oxoacyl-ACP synthase/0.513
4jv3N32Beta-ketoacyl synthase/0.492
2wggTLM3-oxoacyl-[acyl-carrier-protein] synthase 12.3.1.410.490
4c6uTLG3-oxoacyl-ACP synthase/0.483
2gv8NDPThiol-specific monooxygenase1.14.130.460
2wgeTLM3-oxoacyl-[acyl-carrier-protein] synthase 12.3.1.410.450