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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ce0P34Poly [ADP-ribose] polymerase 32.4.2.30

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ce0P34Poly [ADP-ribose] polymerase 32.4.2.301.000
3c49KU8Poly [ADP-ribose] polymerase 32.4.2.300.663
3c4hDRLPoly [ADP-ribose] polymerase 32.4.2.300.629
4gv08MEPoly [ADP-ribose] polymerase 32.4.2.300.568
3l3mA92Poly [ADP-ribose] polymerase 12.4.2.300.538
4gv4MEJPoly [ADP-ribose] polymerase 32.4.2.300.533
4hhy15RPoly [ADP-ribose] polymerase 12.4.2.300.530
4hhz15SPoly [ADP-ribose] polymerase 12.4.2.300.522
3l3lL3LPoly [ADP-ribose] polymerase 12.4.2.300.519
2rd678PPoly [ADP-ribose] polymerase 12.4.2.300.513
3gn73GNPoly [ADP-ribose] polymerase 12.4.2.300.510
4tvj09LPoly [ADP-ribose] polymerase 22.4.2.300.508
1efyBZCPoly [ADP-ribose] polymerase 12.4.2.300.502
1paxDHQPoly [ADP-ribose] polymerase 12.4.2.300.499
3gjwGJWPoly [ADP-ribose] polymerase 12.4.2.300.491
1uk0FRMPoly [ADP-ribose] polymerase 12.4.2.300.486
4r5wXAVPoly [ADP-ribose] polymerase 12.4.2.300.485
5ds309LPoly [ADP-ribose] polymerase 12.4.2.300.476
2rcwAAIPoly [ADP-ribose] polymerase 12.4.2.300.475
4l6s1WQPoly [ADP-ribose] polymerase 12.4.2.300.466
5dsyUHBPoly [ADP-ribose] polymerase 22.4.2.300.465
1uk1FRQPoly [ADP-ribose] polymerase 12.4.2.300.449