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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bllBPQQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3bllBPQQueuine tRNA-ribosyltransferase2.4.2.291.000
3bloQEIQueuine tRNA-ribosyltransferase2.4.2.290.663
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.640
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.638
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.617
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.597
4hvxQEIQueuine tRNA-ribosyltransferase2.4.2.290.595
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.592
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.560
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.545
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.543
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.538
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.516
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.504
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.489
1pxgPRFQueuine tRNA-ribosyltransferase2.4.2.290.488
3bldPRFQueuine tRNA-ribosyltransferase2.4.2.290.484
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.483
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.468
5ero210Fusicoccadiene synthase2.5.1.290.468
3cic316Beta-secretase 13.4.23.460.463
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.462
3p0hFSEPutative tyrosyl-tRNA synthetase/0.461
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.460
4kebFOLDihydrofolate reductase1.5.1.30.458
4eftEFTHeat shock protein HSP 90-alpha/0.457
4u0mGTPCyclic GMP-AMP synthase/0.456
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.453
1hfrMOTDihydrofolate reductase1.5.1.30.452
1q65BHBQueuine tRNA-ribosyltransferase2.4.2.290.452
3pm4F5NEndothiapepsin3.4.23.220.451
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.450
4bftZVTPantothenate kinase2.7.1.330.450
5c6cCMPcGMP-dependent protein kinase 22.7.11.120.450
3own3OWRenin3.4.23.150.449
4emdC5P4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.449
1rneC60Renin3.4.23.150.448
2ed3SAHDiphthine synthase/0.446
3pdqKC6Lysine-specific demethylase 4A1.14.110.446
3lpiZ74Beta-secretase 13.4.23.460.445
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.444
2zseACPPantothenate kinase2.7.1.330.444
3q2jCKIAminoglycoside 3'-phosphotransferase2.7.1.950.444
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.444
2rl1UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.443
4bgbADPPredicted molecular chaperone distantly related to HSP70-fold metalloproteases/0.443
5dp2NAPCurF/0.443
2iqgF2IBeta-secretase 13.4.23.460.442
3ixj586Beta-secretase 13.4.23.460.442
2g1o2IGRenin3.4.23.150.441
3x2fNAIAdenosylhomocysteinase/0.441
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.441
2ejzSAHDiphthine synthase/0.440
2vkmBSDBeta-secretase 13.4.23.460.440