Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
2qnq | QN3 | Gag-Pol polyprotein | 3.4.23.16 |
PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
---|---|---|---|---|---|
2qnq | QN3 | Gag-Pol polyprotein | 3.4.23.16 | 1.000 | |
2r43 | G3G | Gag-Pol polyprotein | 3.4.23.16 | 0.737 | |
2pwc | G3G | Gag-Pol polyprotein | 3.4.23.16 | 0.710 | |
3qbf | JHG | Gag-Pol polyprotein | 3.4.23.16 | 0.708 | |
3qp0 | NI8 | Gag-Pol polyprotein | 3.4.23.16 | 0.692 | |
3kf0 | 3TL | Gag-Pol polyprotein | / | 0.670 | |
3qih | FG7 | Gag-Pol polyprotein | 3.4.23.16 | 0.662 | |
3nu4 | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.661 | |
3qih | NI7 | Gag-Pol polyprotein | 3.4.23.16 | 0.660 | |
3s43 | 478 | Protease | / | 0.659 | |
3bgb | LJG | Gag-Pol polyprotein | 3.4.23.16 | 0.649 | |
2qnp | QN2 | Gag-Pol polyprotein | 3.4.23.16 | 0.647 | |
3qrs | NK8 | Gag-Pol polyprotein | 3.4.23.16 | 0.647 | |
3jw2 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.641 | |
3pwr | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.639 | |
2avm | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.637 | |
2ieo | 017 | Protease | / | 0.637 | |
1sdv | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.631 | |
2i4x | KGQ | Protease | / | 0.631 | |
3nu5 | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.631 | |
3kfn | 3TL | Gag-Pol polyprotein | / | 0.630 | |
3djk | G55 | Gag-Pol polyprotein | 3.4.23.16 | 0.629 | |
3d1y | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.628 | |
3s54 | 017 | Protease | / | 0.627 | |
1sdt | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.625 | |
2aqu | DR7 | Gag-Pol polyprotein | 3.4.23.16 | 0.624 | |
2a4f | AAU | V-1 protease | / | 0.621 | |
3vfa | 031 | Gag-Pol polyprotein | 3.4.23.16 | 0.621 | |
3nuj | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.620 | |
3qpj | N4I | Gag-Pol polyprotein | 3.4.23.16 | 0.620 | |
2qnn | QN1 | Gag-Pol polyprotein | 3.4.23.16 | 0.619 | |
3nxe | 2NC | Protease | / | 0.619 | |
1mrw | K57 | Gag-Pol polyprotein | 3.4.23.16 | 0.614 | |
3nu3 | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.613 | |
3vfb | 031 | Gag-Pol polyprotein | 3.4.23.16 | 0.613 | |
3qrm | NK7 | Gag-Pol polyprotein | 3.4.23.16 | 0.612 | |
2hb3 | GRL | Protease | / | 0.610 | |
2pqz | G0G | Gag-Pol polyprotein | 3.4.23.16 | 0.609 | |
2wkz | 5AH | Gag-Pol polyprotein | / | 0.609 | |
3el5 | 1UN | Gag-Pol polyprotein | / | 0.609 | |
4rvj | 478 | Protease | / | 0.609 | |
2qd6 | 065 | Gag-Pol polyprotein | 3.4.23.16 | 0.608 | |
2nmy | ROC | Protease | / | 0.607 | |
3qn8 | NI7 | Gag-Pol polyprotein | 3.4.23.16 | 0.607 | |
2f8g | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.606 | |
2i4u | DJR | Protease | / | 0.606 | |
1fg6 | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.605 | |
3qro | NK9 | Gag-Pol polyprotein | 3.4.23.16 | 0.605 | |
4hdb | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.605 | |
1hsg | MK1 | Gag-Pol polyprotein | / | 0.604 | |
1ec2 | BEJ | Gag-Pol polyprotein | 3.4.23.16 | 0.603 | |
1hxw | RIT | Gag-Pol polyprotein | / | 0.603 | |
2bpw | 1IN | Gag-Pol polyprotein | 3.4.23.16 | 0.603 | |
2cem | 2AH | Pol protein | / | 0.603 | |
1npv | L27 | Gag-Pol polyprotein | 3.4.23.16 | 0.602 | |
3ekw | DR7 | Gag-Pol polyprotein | 3.4.23.16 | 0.602 | |
1dif | A85 | Gag-Pol polyprotein | / | 0.601 | |
1hvi | A77 | Protease | / | 0.601 | |
2bpz | 3IN | Gag-Pol polyprotein | 3.4.23.16 | 0.601 | |
1ec3 | MS3 | Gag-Pol polyprotein | 3.4.23.16 | 0.600 | |
3oxx | DR7 | Gag-Pol polyprotein | 3.4.23.16 | 0.600 | |
1msm | JE2 | Gag-Pol polyprotein | 3.4.23.16 | 0.599 | |
2bqv | A1A | Protease | / | 0.599 | |
3dk1 | G05 | Gag-Pol polyprotein | 3.4.23.16 | 0.599 | |
3gga | GGW | Gag-Pol polyprotein | / | 0.599 | |
3kfr | 3TL | Gag-Pol polyprotein | / | 0.599 | |
3sa7 | 55A | Protease | / | 0.599 | |
1d4y | TPV | Gag-Pol polyprotein | 3.4.23.16 | 0.598 | |
2avv | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.598 | |
2bpy | 3IN | Gag-Pol polyprotein | 3.4.23.16 | 0.598 | |
2fdd | 385 | Pol protein | / | 0.598 | |
2r3w | G3G | Gag-Pol polyprotein | 3.4.23.16 | 0.598 | |
4ye3 | G04 | Gag-Pol polyprotein | 3.4.23.16 | 0.598 | |
2bb9 | AKC | Gag-Pol polyprotein | 3.4.23.16 | 0.597 | |
3eky | DR7 | Gag-Pol polyprotein | 3.4.23.16 | 0.597 | |
4a6b | QG8 | Gag-Pol polyprotein | 3.4.23.16 | 0.597 | |
3ggx | GGX | Gag-Pol polyprotein | / | 0.596 | |
3nuo | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.596 | |
3sa9 | A68 | Protease | / | 0.596 | |
2f80 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.595 | |
2xye | CXG | Gag-Pol polyprotein | / | 0.595 | |
3el1 | DR7 | Gag-Pol polyprotein | 3.4.23.16 | 0.595 | |
3kfs | 3TL | Gag-Pol polyprotein | / | 0.595 | |
1c70 | L75 | Protease | / | 0.594 | |
1xl5 | 190 | Gag-Pol polyprotein | 3.4.23.16 | 0.594 | |
3bgc | LJH | Gag-Pol polyprotein | 3.4.23.16 | 0.594 | |
3ekp | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.594 | |
3s85 | LK0 | Gag-Pol polyprotein | / | 0.594 | |
2f81 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.593 | |
3ckt | YDP | Gag-Pol polyprotein | 3.4.23.16 | 0.593 | |
2p3b | 3TL | V-1 PROTEASE protein | / | 0.592 | |
2p3b | 3TL | V-1 protease | / | 0.592 | |
2wl0 | 5AH | Gag-Pol polyprotein | / | 0.592 | |
4hdp | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.592 | |
1hvs | A77 | Gag-Pol polyprotein | / | 0.591 | |
1t7k | BH0 | Gag-Pol polyprotein | 3.4.23.16 | 0.591 | |
3a2o | KNJ | Gag-Pol polyprotein | 3.4.23.16 | 0.591 | |
3oxv | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.591 | |
1w5v | BE3 | Gag-Pol polyprotein | 3.4.23.16 | 0.590 | |
1zsf | 0ZS | Gag-Pol polyprotein | 3.4.23.16 | 0.590 | |
3em4 | DR7 | Gag-Pol polyprotein | 3.4.23.16 | 0.590 | |
3zpt | M8Y | Gag-Pol polyprotein | 3.4.23.16 | 0.590 | |
1z1h | HBB | Gag-Pol polyprotein | 3.4.23.16 | 0.589 | |
2fxe | DR7 | Gag-Pol polyprotein | 3.4.23.16 | 0.589 | |
3ekq | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.589 | |
3nwq | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.589 | |
1yt9 | OIS | Gag-Pol polyprotein | / | 0.588 | |
3nu6 | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.588 | |
1hvl | A76 | Gag-Pol polyprotein | / | 0.587 | |
1zsr | 0ZT | Gag-Pol polyprotein | 3.4.23.16 | 0.587 | |
2bpv | 1IN | Gag-Pol polyprotein | 3.4.23.16 | 0.587 | |
2pk6 | O33 | V-1 protease | / | 0.587 | |
3i7e | DJR | Gag-Pol polyprotein | / | 0.587 | |
3ok9 | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.587 | |
3vf5 | 031 | Gag-Pol polyprotein | 3.4.23.16 | 0.587 | |
3zpu | M8B | Gag-Pol polyprotein | 3.4.23.16 | 0.587 | |
1daz | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.586 | |
1mrx | K57 | Gag-Pol polyprotein | 3.4.23.16 | 0.586 | |
1wbm | BLL | Pol protein | / | 0.586 | |
2i4d | QFI | Protease | / | 0.586 | |
2qd8 | 065 | Gag-Pol polyprotein | 3.4.23.16 | 0.586 | |
4djo | MK5 | Pol polyprotein | / | 0.586 | |
4njt | 017 | Protease | / | 0.586 | |
2nnk | ROC | Protease | / | 0.585 | |
2r3t | G4G | Gag-Pol polyprotein | 3.4.23.16 | 0.585 | |
3el4 | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.585 | |
1hvj | A78 | Gag-Pol polyprotein | / | 0.584 | |
1hvk | A79 | Gag-Pol polyprotein | / | 0.584 | |
1kzk | JE2 | Gag-Pol polyprotein | 3.4.23.16 | 0.584 | |
3t3c | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.584 | |
4kb9 | G79 | Protease | / | 0.584 | |
1ec1 | BEE | Gag-Pol polyprotein | 3.4.23.16 | 0.583 | |
1sgu | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.583 | |
2qi3 | MZ5 | Gag-Pol polyprotein | / | 0.583 | |
2r38 | G4G | Gag-Pol polyprotein | 3.4.23.16 | 0.583 | |
2uy0 | HV1 | Gag-Pol polyprotein | 3.4.23.16 | 0.583 | |
3kdd | JZQ | Gag-Pol polyprotein | 3.4.23.16 | 0.583 | |
3oxc | ROC | Protease | / | 0.583 | |
3sa5 | A69 | Protease | / | 0.583 | |
3st5 | G89 | Gag-Pol polyprotein | 3.4.23.16 | 0.583 | |
1dw6 | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.582 | |
1ebw | BEI | Gag-Pol polyprotein | 3.4.23.16 | 0.582 | |
1wbk | 568 | Pol protein | / | 0.582 | |
3bxs | DRS | Gag-Pol polyprotein | 3.4.23.16 | 0.582 | |
3el9 | DR7 | Gag-Pol polyprotein | 3.4.23.16 | 0.582 | |
3jvw | DMP | Gag-Pol polyprotein | 3.4.23.16 | 0.582 | |
3kdc | JZP | Gag-Pol polyprotein | 3.4.23.16 | 0.582 | |
3lin | E13 | Protease | / | 0.582 | |
3tl9 | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.582 | |
1ffi | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.581 | |
1vik | BAY | Gag-Pol polyprotein | / | 0.581 | |
2aoe | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.581 | |
2i4w | KGQ | Protease | / | 0.581 | |
2qd7 | 065 | Gag-Pol polyprotein | 3.4.23.16 | 0.581 | |
2xyf | G40 | Gag-Pol polyprotein | / | 0.581 | |
3d1z | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.581 | |
3ndx | RIT | Gag-Pol polyprotein | 3.4.23.16 | 0.581 | |
1d4j | MSC | Gag-Pol polyprotein | 3.4.23.16 | 0.580 | |
1hpx | KNI | Gag-Pol polyprotein | / | 0.580 | |
1k1u | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.580 | |
2cej | 1AH | Pol protein | / | 0.580 | |
2p3d | 3TL | Protease | / | 0.580 | |
2qhy | MZ1 | Gag-Pol polyprotein | / | 0.580 | |
2qhz | MZ2 | Gag-Pol polyprotein | / | 0.579 | |
3ndw | RIT | Gag-Pol polyprotein | 3.4.23.16 | 0.579 | |
3o9c | K20 | Pol polyprotein | / | 0.579 | |
3zps | EQM | Gag-Pol polyprotein | 3.4.23.16 | 0.579 | |
1iiq | 0ZR | Gag-Pol polyprotein | 3.4.23.16 | 0.578 | |
1mtr | PI6 | Gag-Pol polyprotein | 3.4.23.16 | 0.578 | |
1tcx | IM1 | Gag-Pol polyprotein | 3.4.23.16 | 0.578 | |
3k4v | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.578 | |
1d4l | PI9 | Gag-Pol polyprotein | 3.4.23.16 | 0.577 | |
2a1e | IPF | Gag-Pol polyprotein | 3.4.23.16 | 0.577 | |
2pyn | 1UN | Gag-Pol polyprotein | 3.4.23.16 | 0.577 | |
2qhc | AB1 | Protease | / | 0.577 | |
2qi5 | MZ7 | Gag-Pol polyprotein | / | 0.577 | |
2r5q | 1UN | Gag-Pol polyprotein | / | 0.577 | |
3sa3 | 23X | Protease | / | 0.577 | |
4a6c | QG9 | Gag-Pol polyprotein | 3.4.23.16 | 0.577 | |
4k4p | 3TL | Gag-Pol polyprotein | / | 0.577 | |
1fg8 | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.576 | |
1sbg | IM1 | Gag-Pol polyprotein | / | 0.576 | |
1w5x | BE5 | Gag-Pol polyprotein | 3.4.23.16 | 0.576 | |
3em3 | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.576 | |
4hdf | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.576 | |
4njv | RIT | Protease | / | 0.576 | |
1ohr | 1UN | V-1 PROTEASE protein | / | 0.575 | |
2f3k | RO1 | Protease | / | 0.575 | |
2q64 | 1UN | Gag-Pol polyprotein | 3.4.23.16 | 0.575 | |
4djq | M86 | Pol polyprotein | / | 0.575 | |
1hpo | UNI | Gag-Pol polyprotein | 3.4.23.16 | 0.574 | |
1rl8 | RIT | Gag-Pol polyprotein | 3.4.23.16 | 0.574 | |
2hs2 | 017 | Protease | / | 0.574 | |
2p3a | 3TL | Pol protein | / | 0.574 | |
2q3k | MUW | Gag-Pol polyprotein | / | 0.574 | |
2qak | 1UN | Gag-Pol polyprotein | 3.4.23.16 | 0.574 | |
4dqc | 017 | Gag-Pol polyprotein | / | 0.574 | |
4j5j | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.574 | |
1ec0 | BED | Gag-Pol polyprotein | 3.4.23.16 | 0.573 | |
1hsh | MK1 | Gag-Pol polyprotein | / | 0.573 | |
1ivp | 1ZK | Gag-Pol polyprotein | / | 0.573 | |
1npa | 3NH | Gag-Pol polyprotein | 3.4.23.16 | 0.573 | |
1npw | LGZ | Gag-Pol polyprotein | 3.4.23.16 | 0.573 | |
2hc0 | AB2 | Protease | / | 0.573 | |
2upj | U02 | Gag-Pol polyprotein | 3.4.23.16 | 0.573 | |
3d1x | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.573 | |
3ekv | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.573 | |
1a8g | 2Z4 | Gag-Pol polyprotein | 3.4.23.16 | 0.572 | |
1d4h | BEH | Gag-Pol polyprotein | 3.4.23.16 | 0.572 | |
1ebz | BEC | Gag-Pol polyprotein | 3.4.23.16 | 0.572 | |
1g2k | NM1 | Gag-Pol polyprotein | 3.4.23.16 | 0.572 | |
1k2b | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.572 | |
2fxd | DR7 | Pol polyprotein | / | 0.572 | |
3ndu | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.572 | |
1bv9 | XV6 | Gag-Pol polyprotein | 3.4.23.16 | 0.571 | |
1c6y | MK1 | Protease | / | 0.571 | |
1fej | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.571 | |
1idb | 0DO | Gag-Pol polyprotein | / | 0.571 | |
1mui | AB1 | Protease | / | 0.571 | |
1odw | 0E8 | Gag-Pol polyprotein | 3.4.23.16 | 0.571 | |
1w5y | BE6 | Gag-Pol polyprotein | 3.4.23.16 | 0.571 | |
3jvy | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.571 | |
1a9m | U0E | Gag-Pol polyprotein | / | 0.570 | |
1b6m | PI6 | Gag-Pol polyprotein | 3.4.23.16 | 0.570 | |
1b6p | PI7 | Gag-Pol polyprotein | 3.4.23.16 | 0.570 | |
1bwa | XV6 | Gag-Pol polyprotein | 3.4.23.16 | 0.570 | |
3uhl | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.570 | |
1b6k | PI5 | Gag-Pol polyprotein | 3.4.23.16 | 0.569 | |
1z1r | HBH | Gag-Pol polyprotein | 3.4.23.16 | 0.569 | |
3liv | E16 | Protease | / | 0.569 | |
1hxb | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.568 | |
1qbu | 846 | Gag-Pol polyprotein | 3.4.23.16 | 0.568 | |
2pk5 | 075 | Protease | / | 0.568 | |
3nls | 016 | Gag-Pol polyprotein | 3.4.23.16 | 0.568 | |
3nyg | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.568 | |
3t11 | 3T1 | Gag-Pol polyprotein | 3.4.23.16 | 0.568 | |
3tog | 079 | Gag-Pol polyprotein | 2.7.7.49 | 0.568 | |
3ttp | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.568 | |
4djr | 0KJ | Pol polyprotein | / | 0.568 | |
1d4s | TPV | Gag-Pol polyprotein | 3.4.23.16 | 0.567 | |
1eby | BEB | Gag-Pol polyprotein | 3.4.23.16 | 0.567 | |
1izi | Q50 | Gag-Pol polyprotein | 3.4.23.16 | 0.567 | |
2fde | 385 | Gag-Pol polyprotein | 3.4.23.16 | 0.567 | |
3ndt | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.567 | |
4heg | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.567 | |
4j55 | 031 | Gag-Pol polyprotein | 3.4.23.16 | 0.567 | |
1c6z | ROC | Protease | / | 0.566 | |
2b7z | MK1 | Gag-Pol polyprotein | / | 0.566 | |
2cen | 4AH | Protease | / | 0.566 | |
2i4v | DJR | V-1 protease | / | 0.566 | |
2qci | 065 | Gag-Pol polyprotein | 3.4.23.16 | 0.566 | |
1bdr | IM1 | Gag-Pol polyprotein | 3.4.23.16 | 0.565 | |
1bwb | 146 | Gag-Pol polyprotein | 3.4.23.16 | 0.565 | |
1ff0 | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.565 | |
1sdu | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.565 | |
2bbb | HH1 | Gag-Pol polyprotein | 3.4.23.16 | 0.565 | |
2bpx | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.565 | |
2pym | 1UN | Gag-Pol polyprotein | 3.4.23.16 | 0.565 | |
2q5k | AB1 | Protease | / | 0.565 | |
2z4o | 065 | Gag-Pol polyprotein | 3.4.23.16 | 0.565 | |
3ekt | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.565 | |
3qaa | G04 | Gag-Pol polyprotein | 3.4.23.16 | 0.565 | |
9hvp | 0E9 | Gag-Pol polyprotein | / | 0.565 | |
2nnp | ROC | Protease | / | 0.564 | |
2pwr | G4G | Gag-Pol polyprotein | 3.4.23.16 | 0.564 | |
2rkf | AB1 | Pol protein | / | 0.564 | |
3cyw | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.564 | |
3dcr | KVS | Protease | / | 0.564 | |
3i6o | GR6 | Gag-Pol polyprotein | 3.4.23.16 | 0.564 | |
3mws | 017 | Pol protein | / | 0.564 | |
3sac | AF8 | Protease | / | 0.564 | |
1a94 | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.563 | |
1fgc | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.563 | |
1ida | 0PO | Gag-Pol polyprotein | 3.4.23.47 | 0.563 | |
1qbr | XV6 | Gag-Pol polyprotein | 3.4.23.16 | 0.563 | |
2aid | THK | Gag-Pol polyprotein | 3.4.23.16 | 0.563 | |
3mxd | K53 | Gag-Pol polyprotein | 3.4.23.16 | 0.563 | |
4djp | M73 | Pol polyprotein | / | 0.563 | |
4qgi | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.563 | |
2fle | AI | Protease | / | 0.562 | |
3bva | 2NC | Gag-Pol polyprotein | 3.4.23.16 | 0.562 | |
3cyx | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.562 | |
3sa6 | F71 | Protease | / | 0.562 | |
1hih | C20 | Gag-Pol polyprotein | / | 0.561 | |
2ien | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.561 | |
2qi4 | MZ6 | Gag-Pol polyprotein | / | 0.561 | |
4njs | G08 | Protease | / | 0.561 | |
2qi0 | MZ3 | Gag-Pol polyprotein | / | 0.560 | |
2qi7 | MZ9 | Gag-Pol polyprotein | / | 0.560 | |
3ekx | 1UN | Gag-Pol polyprotein | 3.4.23.16 | 0.560 | |
3em6 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.560 | |
3nu9 | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.560 | |
7upj | INU | Gag-Pol polyprotein | 3.4.23.16 | 0.560 | |
1ajv | NMB | Gag-Pol polyprotein | 3.4.23.16 | 0.559 | |
1vij | BAY | Gag-Pol polyprotein | / | 0.559 | |
2idw | 017 | Protease | / | 0.559 | |
3bhe | BZN | Gag-Pol polyprotein | 3.4.23.16 | 0.559 | |
3o9i | A61 | Gag-Pol polyprotein | / | 0.559 | |
3saa | 77F | Protease | / | 0.559 | |
3vf7 | 031 | Gag-Pol polyprotein | 3.4.23.16 | 0.559 | |
1a8k | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.558 | |
1d4k | PI8 | Gag-Pol polyprotein | 3.4.23.16 | 0.558 | |
1izh | Q50 | Protease | / | 0.558 | |
1qbs | DMP | Gag-Pol polyprotein | 3.4.23.16 | 0.558 | |
3aid | ARQ | Gag-Pol polyprotein | 3.4.23.16 | 0.558 | |
3i2l | 2NC | Protease | / | 0.558 | |
3liq | E14 | Protease | / | 0.558 | |
3lit | E15 | Protease | / | 0.558 | |
3o9h | K2E | Gag-Pol polyprotein | / | 0.558 | |
4dqh | 017 | Gag-Pol polyprotein | / | 0.558 | |
4q1y | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.558 | |
1g35 | AHF | Gag-Pol polyprotein | 3.4.23.16 | 0.557 | |
1hii | C20 | Gag-Pol polyprotein | / | 0.557 | |
1meu | DMP | Gag-Pol polyprotein | 3.4.23.16 | 0.557 | |
2q54 | MU1 | Protease | / | 0.557 | |
3gi4 | K60 | Gag-Pol polyprotein | / | 0.557 | |
3o9d | K19 | Pol polyprotein | / | 0.557 | |
4dqe | 017 | Gag-Pol polyprotein | / | 0.557 | |
1hiv | 1ZK | Gag-Pol polyprotein | / | 0.556 | |
1t7i | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.556 | |
4dfg | 0JV | Gag-Pol polyprotein | 3.4.23.16 | 0.556 | |
1tcw | IM1 | Gag-Pol polyprotein | / | 0.555 | |
3mxe | K54 | Gag-Pol polyprotein | 3.4.23.16 | 0.555 | |
3s56 | ROC | Protease | / | 0.555 | |
4a4q | UX9 | Pol protein | / | 0.555 | |
1k6v | XN2 | Gag-Pol polyprotein | 3.4.23.16 | 0.554 | |
4gb2 | 0LQ | Gag-Pol polyprotein | 2.7.7.49 | 0.554 | |
1c6x | 3IN | Protease | / | 0.553 | |
1d4i | BEG | Gag-Pol polyprotein | 3.4.23.16 | 0.553 | |
1ivq | 0PX | Gag-Pol polyprotein | / | 0.553 | |
1mes | DMP | Gag-Pol polyprotein | 3.4.23.16 | 0.553 | |
3sab | F78 | Protease | / | 0.553 | |
1b6l | PI4 | Gag-Pol polyprotein | 3.4.23.16 | 0.552 | |
1sh9 | RIT | Gag-Pol polyprotein | 3.4.23.16 | 0.552 | |
2avs | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.552 | |
3o9g | F53 | Gag-Pol polyprotein | / | 0.552 | |
3wsj | MK1 | Protease | / | 0.552 | |
4dqb | 017 | Gag-Pol polyprotein | / | 0.552 | |
2psu | MUU | Protease | / | 0.551 | |
2qi6 | MZ8 | Gag-Pol polyprotein | / | 0.551 | |
3lix | E17 | Protease | / | 0.551 | |
3gi6 | D78 | Gag-Pol polyprotein | / | 0.550 | |
3sa4 | F72 | Protease | / | 0.550 | |
2r5p | MK1 | Gag-Pol polyprotein | / | 0.549 | |
3el0 | 1UN | Gag-Pol polyprotein | 3.4.23.16 | 0.549 | |
4nju | TPV | Protease | / | 0.549 | |
1ajx | AH1 | Gag-Pol polyprotein | 3.4.23.16 | 0.548 | |
1jld | 0PP | Gag-Pol polyprotein | / | 0.548 | |
3hzc | 2NC | Protease | / | 0.548 | |
3nwx | KVS | Gag-Pol polyprotein | 3.4.23.16 | 0.548 | |
2uxz | HI1 | Gag-Pol polyprotein | 3.4.23.16 | 0.547 | |
3ec0 | GRL | Gag-Pol polyprotein | 3.4.23.47 | 0.547 | |
3lzv | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.547 | |
1msn | JE2 | Gag-Pol polyprotein | 3.4.23.16 | 0.546 | |
1ody | LP1 | Gag-Pol polyprotein | 3.4.23.16 | 0.546 | |
3ufn | ROC | Gag-Pol polyprotein | / | 0.546 | |
4hla | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.546 | |
2b60 | RIT | Pol polyprotein | / | 0.545 | |
2hs1 | 017 | Protease | / | 0.545 | |
3ecg | 065 | Gag-Pol polyprotein | 3.4.23.47 | 0.545 | |
1t3r | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.544 | |
2q63 | 1UN | Gag-Pol polyprotein | 3.4.23.16 | 0.544 | |
3sa8 | K83 | Protease | / | 0.544 | |
1hpv | 478 | Gag-Pol polyprotein | / | 0.543 | |
1k2c | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.543 | |
1qbt | 146 | Gag-Pol polyprotein | 3.4.23.16 | 0.543 | |
3o9b | K2A | Pol polyprotein | / | 0.543 | |
3ucb | 017 | Gag-Pol polyprotein | / | 0.543 | |
2q55 | MU0 | Protease | / | 0.542 | |
3oy4 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.542 | |
1bai | 0Q4 | Gag-Pro polyprotein | / | 0.541 | |
2z54 | AB1 | Gag-Pol polyprotein | 3.4.23.16 | 0.541 | |
3ggu | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.541 | |
3o9a | K14 | Pol polyprotein | / | 0.541 | |
3o9e | A60 | Pol polyprotein | / | 0.541 | |
1pro | A88 | Gag-Pol polyprotein | / | 0.540 | |
2p3c | 3TL | Protease | / | 0.540 | |
3tof | 076 | Gag-Pol polyprotein | 2.7.7.49 | 0.540 | |
1hwr | 216 | Gag-Pol polyprotein | 3.4.23.16 | 0.539 | |
3bxr | DRR | Gag-Pol polyprotein | 3.4.23.16 | 0.539 | |
3gi5 | K62 | Gag-Pol polyprotein | / | 0.539 | |
4i8z | G08 | Gag-Pol polyprotein | 3.4.23.16 | 0.539 | |
1fff | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.538 | |
3lzs | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.537 | |
4dqf | 017 | Gag-Pol polyprotein | / | 0.537 | |
1bv7 | XV6 | Gag-Pol polyprotein | 3.4.23.16 | 0.536 | |
1k6t | XN1 | Gag-Pol polyprotein | 3.4.23.16 | 0.536 | |
1m0b | 0ZQ | Gag-Pol polyprotein | 3.4.23.16 | 0.536 | |
3d20 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.536 | |
3fx5 | KNI | Gag-Pol polyprotein | 3.4.23.16 | 0.536 | |
1hvr | XK2 | Gag-Pol polyprotein | / | 0.535 | |
2qi1 | MZ4 | Gag-Pol polyprotein | / | 0.535 | |
2psv | MUV | Protease | / | 0.534 | |
1bdl | IM1 | Gag-Pol polyprotein | 3.4.23.16 | 0.533 | |
1hos | PHP | Gag-Pol polyprotein | / | 0.533 | |
3toh | 079 | Gag-Pol polyprotein | 2.7.7.49 | 0.533 | |
1siv | PSI | Gag-Pol polyprotein | / | 0.532 | |
3o9f | K2D | Gag-Pol polyprotein | / | 0.532 | |
3oxw | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.532 | |
1hbv | GAN | Gag-Pol polyprotein | / | 0.531 | |
4q1w | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.531 | |
2i0a | MUI | Protease | / | 0.530 | |
3o99 | K13 | Pol polyprotein | / | 0.530 | |
1hvh | Q82 | Gag-Pol polyprotein | 3.4.23.16 | 0.529 | |
1k6c | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.529 | |
1mer | DMQ | Gag-Pol polyprotein | 3.4.23.16 | 0.529 | |
3dck | KVI | Protease | / | 0.529 | |
2o4p | TPV | Protease | / | 0.528 | |
1t7j | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.526 | |
1bdq | IM1 | Gag-Pol polyprotein | 3.4.23.16 | 0.525 | |
3pwm | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.523 | |
1n49 | RIT | Gag-Pol polyprotein | 3.4.23.16 | 0.522 | |
1ebk | 0Q4 | Gag-Pol polyprotein | 3.4.23.16 | 0.521 | |
1xl2 | 189 | Gag-Pol polyprotein | 3.4.23.16 | 0.521 | |
4j54 | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.520 | |
6upj | NIU | Gag-Pol polyprotein | / | 0.520 | |
1dmp | DMQ | Gag-Pol polyprotein | 3.4.23.16 | 0.518 | |
3r4b | 74T | Gag-Pol polyprotein | / | 0.518 | |
3upj | U03 | Gag-Pol polyprotein | / | 0.518 | |
2i0d | MUT | Protease | / | 0.517 | |
3bvb | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.516 | |
4q1x | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.516 | |
3lzu | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.511 | |
1met | DMP | Gag-Pol polyprotein | 3.4.23.16 | 0.507 | |
3so9 | 017 | Pol protein | / | 0.505 | |
3ogq | AB1 | Pol polyprotein | / | 0.502 | |
4upj | U04 | Gag-Pol polyprotein | / | 0.492 | |
3slz | 3TL | Putative gag-pro-pol polyprotein | / | 0.489 | |
5upj | UIN | Gag-Pol polyprotein | / | 0.485 | |
3sm2 | 478 | Putative gag-pro-pol polyprotein | / | 0.478 | |
3oag | LPQ | Renin | 3.4.23.15 | 0.469 |