1.800 Å
X-ray
1998-03-20
| Name: | Gag-Pol polyprotein |
|---|---|
| ID: | POL_HV1H2 |
| AC: | P04585 |
| Organism: | Human immunodeficiency virus type 1 group M subtype B |
| Reign: | Viruses |
| TaxID: | 11706 |
| EC Number: | 3.4.23.16 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 50 % |
| B | 50 % |
| B-Factor: | 18.898 |
|---|---|
| Number of residues: | 36 |
| Including | |
| Standard Amino Acids: | 36 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.902 | 627.750 |
| % Hydrophobic | % Polar |
|---|---|
| 48.39 | 51.61 |
| According to VolSite | |

| HET Code: | 216 |
|---|---|
| Formula: | C25H30N2O3 |
| Molecular weight: | 406.517 g/mol |
| DrugBank ID: | DB06910 |
| Buried Surface Area: | 62.62 % |
| Polar Surface area: | 64.01 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -9.29753 | 16.1293 | 27.9111 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C37 | CD2 | LEU- 23 | 4.28 | 0 | Hydrophobic |
| C63 | CD2 | LEU- 23 | 4.37 | 0 | Hydrophobic |
| O4 | OD1 | ASP- 25 | 2.82 | 163.56 | H-Bond (Ligand Donor) |
| O5 | OD1 | ASP- 25 | 2.91 | 164.21 | H-Bond (Ligand Donor) |
| C4 | CB | ALA- 28 | 4.43 | 0 | Hydrophobic |
| C5 | CB | ALA- 28 | 4.49 | 0 | Hydrophobic |
| O1 | N | ILE- 50 | 3.25 | 158.57 | H-Bond (Protein Donor) |
| O1 | N | ILE- 50 | 3.21 | 164.91 | H-Bond (Protein Donor) |
| C67 | CG1 | ILE- 50 | 4.13 | 0 | Hydrophobic |
| C33 | CG2 | ILE- 50 | 4.12 | 0 | Hydrophobic |
| C34 | CG | PRO- 81 | 3.42 | 0 | Hydrophobic |
| C66 | CG | PRO- 81 | 3.59 | 0 | Hydrophobic |
| C35 | CG1 | VAL- 82 | 3.69 | 0 | Hydrophobic |
| C65 | CG2 | VAL- 82 | 3.71 | 0 | Hydrophobic |
| C31 | CD1 | ILE- 84 | 3.96 | 0 | Hydrophobic |
| C61 | CD1 | ILE- 84 | 3.94 | 0 | Hydrophobic |