1.800 Å
X-ray
1998-03-20
Name: | Gag-Pol polyprotein |
---|---|
ID: | POL_HV1H2 |
AC: | P04585 |
Organism: | Human immunodeficiency virus type 1 group M subtype B |
Reign: | Viruses |
TaxID: | 11706 |
EC Number: | 3.4.23.16 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 50 % |
B | 50 % |
B-Factor: | 18.898 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 36 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.902 | 627.750 |
% Hydrophobic | % Polar |
---|---|
48.39 | 51.61 |
According to VolSite |
HET Code: | 216 |
---|---|
Formula: | C25H30N2O3 |
Molecular weight: | 406.517 g/mol |
DrugBank ID: | DB06910 |
Buried Surface Area: | 62.62 % |
Polar Surface area: | 64.01 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-9.29753 | 16.1293 | 27.9111 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C37 | CD2 | LEU- 23 | 4.28 | 0 | Hydrophobic |
C63 | CD2 | LEU- 23 | 4.37 | 0 | Hydrophobic |
O4 | OD1 | ASP- 25 | 2.82 | 163.56 | H-Bond (Ligand Donor) |
O5 | OD1 | ASP- 25 | 2.91 | 164.21 | H-Bond (Ligand Donor) |
C4 | CB | ALA- 28 | 4.43 | 0 | Hydrophobic |
C5 | CB | ALA- 28 | 4.49 | 0 | Hydrophobic |
O1 | N | ILE- 50 | 3.25 | 158.57 | H-Bond (Protein Donor) |
O1 | N | ILE- 50 | 3.21 | 164.91 | H-Bond (Protein Donor) |
C67 | CG1 | ILE- 50 | 4.13 | 0 | Hydrophobic |
C33 | CG2 | ILE- 50 | 4.12 | 0 | Hydrophobic |
C34 | CG | PRO- 81 | 3.42 | 0 | Hydrophobic |
C66 | CG | PRO- 81 | 3.59 | 0 | Hydrophobic |
C35 | CG1 | VAL- 82 | 3.69 | 0 | Hydrophobic |
C65 | CG2 | VAL- 82 | 3.71 | 0 | Hydrophobic |
C31 | CD1 | ILE- 84 | 3.96 | 0 | Hydrophobic |
C61 | CD1 | ILE- 84 | 3.94 | 0 | Hydrophobic |