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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1queFADFerredoxin--NADP reductase1.18.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1queFADFerredoxin--NADP reductase1.18.1.21.000
1ogiFADFerredoxin--NADP reductase1.18.1.20.647
1h42FADFerredoxin--NADP reductase1.18.1.20.646
1e62FADFerredoxin--NADP reductase1.18.1.20.640
1ogjFADFerredoxin--NADP reductase1.18.1.20.629
1e63FADFerredoxin--NADP reductase1.18.1.20.627
3vo2FADFerredoxin--NADP reductase/0.623
4bprFADFerredoxin--NADP reductase1.18.1.20.623
1bjkFADFerredoxin--NADP reductase1.18.1.20.620
4c43FADFerredoxin--NADP reductase1.18.1.20.616
1e64FADFerredoxin--NADP reductase1.18.1.20.611
1gr1FADFerredoxin--NADP reductase1.18.1.20.611
1gawFADFerredoxin/0.608
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.603
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.598
2b5oFADFerredoxin--NADP reductase1.18.1.20.596
1gjrFADFerredoxin--NADP reductase1.18.1.20.595
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.594
1qh0FADFerredoxin--NADP reductase1.18.1.20.594
1qgyFADFerredoxin--NADP reductase1.18.1.20.592
3zbtFADFerredoxin--NADP reductase1.18.1.20.590
1h85FADFerredoxin--NADP reductase1.18.1.20.587
3zc3FADFerredoxin--NADP reductase1.18.1.20.585
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.582
2rc6FADFerredoxin--NADP reductase/0.582
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.581
1go2FADFerredoxin--NADP reductase1.18.1.20.573
1sm4FADFerredoxin--NADP reductase/0.567
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.566
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.565
1gaqFADFerredoxin/0.562
3w5uFADFerredoxin/0.554
1qgzFADFerredoxin--NADP reductase1.18.1.20.552
1w35FADFerredoxin--NADP reductase1.18.1.20.549
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.528
1w87FADFerredoxin--NADP reductase1.18.1.20.524
3fpkFADFerredoxin-NADP reductase/0.523
1b2rFADFerredoxin--NADP reductase1.18.1.20.520
1ewyFADFerredoxin--NADP reductase1.18.1.20.515
5ah5LSSLeucine--tRNA ligase/0.508
1amoFADNADPH--cytochrome P450 reductase/0.506
2rc5FADFerredoxin--NADP reductase/0.506
3jqrFADFerredoxin--NADP reductase, apicoplast/0.506
3qfcFADNADPH--cytochrome P450 reductase/0.496
3qfsFADNADPH--cytochrome P450 reductase/0.493
2ok8FADFerredoxin--NADP reductase, apicoplast/0.492
3qftFADNADPH--cytochrome P450 reductase/0.488
1ja1FADNADPH--cytochrome P450 reductase/0.487
4yaoFADNADPH--cytochrome P450 reductase/0.482
4y9uFADNADPH--cytochrome P450 reductase/0.475
1j9zFADNADPH--cytochrome P450 reductase/0.474
2vyqFADFerredoxin--NADP reductase1.18.1.20.465
2e8uIPEGeranylgeranyl pyrophosphate synthase/0.464
4kq6DLZ6,7-dimethyl-8-ribityllumazine synthase/0.464
4bfxZVXPantothenate kinase2.7.1.330.463
1w34FADFerredoxin--NADP reductase1.18.1.20.461
4bfvZVVPantothenate kinase2.7.1.330.458
4wx2F6FTryptophan synthase alpha chain/0.458
4wx2F6FTryptophan synthase beta chain4.2.1.200.458
3busSAHDemethylrebeccamycin-D-glucose O-methyltransferase/0.457
4j7hTRHPCZA361.3/0.455
5c6cCMPcGMP-dependent protein kinase 22.7.11.120.455
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.453
5a4vQUEGlutathione S-transferase F22.5.1.180.452
3h3t16HCollagen type IV alpha-3-binding protein/0.451
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.450
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.450
1diaL24C-1-tetrahydrofolate synthase, cytoplasmic1.5.1.50.449
3rtnRTNBeta-secretase 13.4.23.460.449
3ojxFADNADPH--cytochrome P450 reductase/0.448
4b4vL34Bifunctional protein FolD/0.448
1xddAAYIntegrin alpha-L/0.447
2gjnFMNNitronate monooxygenase1.13.12.160.447
2re8GSUGlutamine--tRNA ligase6.1.1.180.447
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.447
1qrsATPGlutamine--tRNA ligase6.1.1.180.445
2a58RBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.445
3i0pNADMalate dehydrogenase, putative/0.445
3zv7NHGAcetylcholinesterase3.1.1.70.444
1h60STRPentaerythritol tetranitrate reductase/0.443
1qoqIGPTryptophan synthase alpha chain/0.443
3af1GDPPantothenate kinase2.7.1.330.443
3gxfIFMGlucosylceramidase3.2.1.450.443
2a57CRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.442
3h3sH15Collagen type IV alpha-3-binding protein/0.442
4k1xFADNADPH:ferredoxin reductase/0.442
1vceSAHDiphthine synthase/0.441
2vn1FK5Peptidylprolyl isomerase/0.441
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.441
1tllFADNitric oxide synthase, brain1.14.13.390.440
2hk9NAPShikimate dehydrogenase (NADP(+))/0.440
2zevB71Geranylgeranyl pyrophosphate synthase/0.440
3ojwFADNADPH--cytochrome P450 reductase/0.440