sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1mvs | DTM | Dihydrofolate reductase | 1.5.1.3 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1mvs | DTM | Dihydrofolate reductase | 1.5.1.3 | 1.000 | |
| 1pd9 | CO4 | Dihydrofolate reductase | 1.5.1.3 | 0.749 | |
| 4g95 | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.673 | |
| 1u71 | MXA | Dihydrofolate reductase | 1.5.1.3 | 0.659 | |
| 1drf | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.626 | |
| 3oaf | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.619 | |
| 2dhf | DZF | Dihydrofolate reductase | 1.5.1.3 | 0.607 | |
| 1dr3 | TAP | Dihydrofolate reductase | 1.5.1.3 | 0.601 | |
| 1s3u | TQD | Dihydrofolate reductase | 1.5.1.3 | 0.600 | |
| 2w3b | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.600 | |
| 1mvt | DTM | Dihydrofolate reductase | 1.5.1.3 | 0.597 | |
| 3s7a | 684 | Dihydrofolate reductase | 1.5.1.3 | 0.597 | |
| 3s3v | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.596 | |
| 1dhf | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.592 | |
| 1s3v | TQD | Dihydrofolate reductase | 1.5.1.3 | 0.590 | |
| 1dr5 | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.586 | |
| 1dr2 | TAP | Dihydrofolate reductase | 1.5.1.3 | 0.581 | |
| 3nxx | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.568 | |
| 3dga | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.566 | |
| 1dr3 | HBI | Dihydrofolate reductase | 1.5.1.3 | 0.565 | |
| 3d84 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.562 | |
| 3n0h | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.559 | |
| 3tqa | NDP | Dihydrofolate reductase | / | 0.550 | |
| 8dfr | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.543 | |
| 3eig | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.528 | |
| 3kjs | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.528 | |
| 3hbb | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.527 | |
| 3irm | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.522 | |
| 2h2q | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.519 | |
| 1diu | BDM | Dihydrofolate reductase | 1.5.1.3 | 0.510 | |
| 3clb | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.507 | |
| 2cig | 1DG | Dihydrofolate reductase | 1.5.1.3 | 0.506 | |
| 3inv | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.505 | |
| 1dg8 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.500 | |
| 4m6j | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.500 | |
| 1j3j | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.499 | |
| 3dg8 | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.493 | |
| 1ai9 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.489 | |
| 2w9h | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.487 | |
| 1dis | BDM | Dihydrofolate reductase | 1.5.1.3 | 0.480 | |
| 3qlr | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.479 | |
| 3qls | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.479 | |
| 1rx1 | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.477 | |
| 1dds | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.464 | |
| 4kl9 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.464 | |
| 3och | 2MX | Dihydrofolate reductase | 1.5.1.3 | 0.463 | |
| 4cd2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.462 | |
| 1ia4 | TQ6 | Dihydrofolate reductase | 1.5.1.3 | 0.461 | |
| 1m78 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.460 | |
| 1bzf | TMQ | Dihydrofolate reductase | 1.5.1.3 | 0.459 | |
| 1dhj | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.458 | |
| 1tdr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.457 | |
| 1ia1 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.455 | |
| 1jol | FFO | Dihydrofolate reductase | 1.5.1.3 | 0.454 | |
| 3drc | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.453 | |
| 1rb3 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.451 | |
| 1ma0 | NAD | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.449 | |
| 2y6f | M9F | Isopenicillin N synthase | 1.21.3.1 | 0.449 | |
| 4ele | 31I | Dihydrofolate reductase | / | 0.447 | |
| 1dra | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 4ej1 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 2gjl | FMN | Nitronate monooxygenase | 1.13.12.16 | 0.445 | |
| 1ddr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.444 | |
| 1re7 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.444 | |
| 2b37 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.444 | |
| 2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.444 | |
| 4x5j | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.444 | |
| 4elb | 34S | Dihydrofolate reductase | / | 0.443 | |
| 5ecc | NAP | Dehydrofolate reductase type I | / | 0.443 | |
| 4dfr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.442 | |
| 4elb | 34R | Dihydrofolate reductase | / | 0.441 | |
| 4kne | 1CY | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 2fzw | NAD | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.440 | |
| 2uag | UMA | UDP-N-acetylmuramoylalanine--D-glutamate ligase | 6.3.2.9 | 0.440 |