scPDB - Distribution of Cavity Similarity values of 1f3e entry / Site 1

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1f3e	DPZ	Queuine tRNA-ribosyltransferase	2.4.2.29

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity
1f3e	DPZ	Queuine tRNA-ribosyltransferase	2.4.2.29	1.000
1k4g	AIQ	Queuine tRNA-ribosyltransferase	2.4.2.29	0.720
1k4h	APQ	Queuine tRNA-ribosyltransferase	2.4.2.29	0.612
2z1w	BDI	Queuine tRNA-ribosyltransferase	2.4.2.29	0.611
4h7z	GUN	Queuine tRNA-ribosyltransferase	2.4.2.29	0.610
1efz	PRF	Queuine tRNA-ribosyltransferase	2.4.2.29	0.607
2qzr	S79	Queuine tRNA-ribosyltransferase	2.4.2.29	0.602
3ge7	AFQ	Queuine tRNA-ribosyltransferase	2.4.2.29	0.602
4hsh	QEI	Queuine tRNA-ribosyltransferase	2.4.2.29	0.598
1q4w	DQU	Queuine tRNA-ribosyltransferase	2.4.2.29	0.597
4gh1	0WX	Queuine tRNA-ribosyltransferase	2.4.2.29	0.567
1n2v	BDI	Queuine tRNA-ribosyltransferase	2.4.2.29	0.563
4gcx	PRF	Queuine tRNA-ribosyltransferase	2.4.2.29	0.561
1ozq	PRF	Queuine tRNA-ribosyltransferase	2.4.2.29	0.560
4gg9	0WW	Queuine tRNA-ribosyltransferase	2.4.2.29	0.555
4hqv	QEI	Queuine tRNA-ribosyltransferase	2.4.2.29	0.546
1pxg	PRF	Queuine tRNA-ribosyltransferase	2.4.2.29	0.537
1p0e	PRF	Queuine tRNA-ribosyltransferase	2.4.2.29	0.534
1q63	AIQ	Queuine tRNA-ribosyltransferase	2.4.2.29	0.528
4gh3	0EV	Queuine tRNA-ribosyltransferase	2.4.2.29	0.528
4gi4	0EX	Queuine tRNA-ribosyltransferase	2.4.2.29	0.527
3sm0	AEK	Queuine tRNA-ribosyltransferase	2.4.2.29	0.525
1y5x	E89	Queuine tRNA-ribosyltransferase	2.4.2.29	0.523
2bbf	344	Queuine tRNA-ribosyltransferase	2.4.2.29	0.522
4giy	0WY	Queuine tRNA-ribosyltransferase	2.4.2.29	0.517
4hvx	QEI	Queuine tRNA-ribosyltransferase	2.4.2.29	0.516
3gc5	2MQ	Queuine tRNA-ribosyltransferase	2.4.2.29	0.513
2z1x	PRF	Queuine tRNA-ribosyltransferase	2.4.2.29	0.505
1y5w	NEZ	Queuine tRNA-ribosyltransferase	2.4.2.29	0.497
3bll	BPQ	Queuine tRNA-ribosyltransferase	2.4.2.29	0.496
4fps	0UX	Queuine tRNA-ribosyltransferase	2.4.2.29	0.494
3gc4	AAQ	Queuine tRNA-ribosyltransferase	2.4.2.29	0.492
1r5y	DQU	Queuine tRNA-ribosyltransferase	2.4.2.29	0.491
4fsa	0V3	Queuine tRNA-ribosyltransferase	2.4.2.29	0.491
1q65	BHB	Queuine tRNA-ribosyltransferase	2.4.2.29	0.490
4fr1	0V2	Queuine tRNA-ribosyltransferase	2.4.2.29	0.478
2pot	GUN	Queuine tRNA-ribosyltransferase	2.4.2.29	0.473
4q8p	CKR	Queuine tRNA-ribosyltransferase	2.4.2.29	0.467
1y5v	NE8	Queuine tRNA-ribosyltransferase	2.4.2.29	0.464
1q66	KMB	Queuine tRNA-ribosyltransferase	2.4.2.29	0.451
1g7v	PAI	2-dehydro-3-deoxyphosphooctonate aldolase	2.5.1.55	0.446
2a0y	DIH	Purine nucleoside phosphorylase	2.4.2.1	0.446
3fhx	PLP	Pyridoxal kinase	2.7.1.35	0.441
4ocv	ANP	Aminoglycoside phosphotransferase	/	0.441
4gki	0JN	Aminoglycoside 3'-phosphotransferase AphA1-IAB	/	0.440